VIGGS:GBrowse

Vigan.04G425700.01

Basic Information:

Name:	Vigan.04G425700.01 Multiple alignment Variant Information
Position:	Chr04:53306365..53310835 (+ strand)
Length:	4471

Functional Information:

Description:	Similar to Uncharacterized protein. [A9UHK7, Glycine max]
GO:	Biological Process: transcription, DNA-dependent (GO:0006351)
	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: DNA binding (GO:0003677)
	Molecular Function: chromatin binding (GO:0003682)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	SANT/Myb domain (IPR001005)
	Homeodomain-like (IPR009057)
	Myb-like domain (IPR017877)
	Trihelix transcription factor GT3 (IPR027759)
	C2H2- zinc finger protein family (IPR027775)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:11.36,8.77,7.37,7.93,11.59,8.50,10.30,7.25
Arabidopsis thaliana homolog:	AT1G13450.1

Automatic updates:

Name:	NM_001249620 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max GT-1 (LOC100137074), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:53306365..53306647 (+ strand)
Length:	283
Type:	five_prime_UTR

Position:	Chr04:53306648..53307182 (+ strand)
Length:	535
Type:	CDS

Position:	Chr04:53308232..53308270 (+ strand)
Length:	39
Type:	CDS

Position:	Chr04:53309311..53309442 (+ strand)
Length:	132
Type:	CDS

Position:	Chr04:53309724..53309948 (+ strand)
Length:	225
Type:	CDS

Position:	Chr04:53310366..53310568 (+ strand)
Length:	203
Type:	CDS

Position:	Chr04:53310569..53310835 (+ strand)
Length:	267
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G425700.01
ATAATATTGT CAAGAAGAGA CAGACACGTC CGTCTTCCTC ATCCCCTTGC TTTCCACCGC ATCCAAAAAA GCTTTTACTT
CACGCTGACA CACACAACGC AAAACCCCTA ACCTTCTTCA CTGTTTCACC ACTTCAAAAT TTCACCCCAA AACCCAATCC
CTAACTTTTA CAATTACAAT TACCATCGCC ATCACTCTCT CTTTCTCAAT TTTCCTTCTG CAATAGAATC CCTCAAACCA
AAAATTCACA CTCTCACACA TACAACAACC AACTTACCGA ACCATGTATT TGTCGGAGAA GCCGCGTCCA ATCGATTTCT
ACAAGGAGGA AGGCGCGCGC GACATGATGA TCGAGGTGGT CTCCAACGGT GAACTCCCGC CTCCGCCGCC GCACCACCCG
CCGCCGATGA TCCTCGGCGA GAGCAGTGGA GAAGACCCCG AGGTGGAGAT CAAGGCCCCC AAGAAACGGG CCGAGACGTG
GGTACAGGAC GAGACGCGCT CGCTCATTGG CCTCCGCCGC GAGATGGACG CGCTCTTCAA TACCTCCAAG TCCAACAAGC
ACCTGTGGGA ACAGATATCC GCCAAGATGA GAGAGAAGGG TTTTGATCGC TCTCCCACCA TGTGCACCGA TAAGTGGCGC
AACCTCCTGA AGGAGTTCAA GAAGGCCAAG CACCAGGACC GGGGAGGCAG TGGCTCTGCT AAGATGTCGT ATTACAAGGA
GATTGACGAG ATCCTCAGAG AGAGGAACAA GAACGTGCAG TACAAGAGCC CCACTCCTCC GCCAAAGGTT GATTCTTTCA
TGCAGTTTGC TGATAAAGGT ATTGATGATA CTAGCATCTC TTTTGGACCT GTAGAAGCTA CTGGAAGACC AACACTTAAT
CTTGAGAGAA GTTTGGATCA TGATGGACAT CCTCTTGCCA TTACCACAGC TGATGCTGTT GCAGCTGGCG GAGTCCCTCC
TTGGAATTGG AGAGAGACTT CTGGAAATGG TGGAGAAAGT CAGTCATGTT GTGGAAGGGT TATATCAGTT AAATGGTGTG
ATTATACAAG ACGAATAGGT ATTGACGGCA CTCCAGAAGC CATCAAAGAA GCAATCAGAG CTGCTTTTAG GTTGAGAACT
AAACGCACAT TTTGGTTGGA GGATGAGGAC CAGATTATCC GAAGTATTGA CCGTGAAATG CCTATTGGAA GTTACACTCT
TCACCTTGAT GAAGGAATGG CCATTAAATT ATGTCTCTAT GACGAGTCTG AGCACCTTCC TGTGCATACT GAAGATAAGG
TATTTTACAC TGAAAATGAT TACCGTGATT TTCTGACCCG GCGGGGTTGG GTATGTCTAA GAGAATTTGA CGGATATAGA
AATATTGACA ATTTGGATGA TCTTCGACCT GGTGCTATAT ATCGTGGTGT GAGTTGAAAC TTTAAAGTAG ATGGTATGAT
CAAATTATCT GGAGAACTAT GGTGGGTCTG TTCAGGTTTT TGATATATGT GCGACACTAA CCTGAAATTG TATTAGTTTT
ACATTTGATA ACGCTGTTTA TAGTTTTTTG ATAGGTAAAT TAACTAGCCC TTCTGCACAA AAATCCGTTT CAATCAATGC
CGTTTACATG TCTGTAAATA TGCATTTGCA GTGACAACAT ATTATTATTA TTGTCTAGAT TTTTTAATGG ATCATTTTCG
TCAA

[show][hide][copy]CDS

>Vigan.04G425700.01
ATGTATTTGT CGGAGAAGCC GCGTCCAATC GATTTCTACA AGGAGGAAGG CGCGCGCGAC ATGATGATCG AGGTGGTCTC
CAACGGTGAA CTCCCGCCTC CGCCGCCGCA CCACCCGCCG CCGATGATCC TCGGCGAGAG CAGTGGAGAA GACCCCGAGG
TGGAGATCAA GGCCCCCAAG AAACGGGCCG AGACGTGGGT ACAGGACGAG ACGCGCTCGC TCATTGGCCT CCGCCGCGAG
ATGGACGCGC TCTTCAATAC CTCCAAGTCC AACAAGCACC TGTGGGAACA GATATCCGCC AAGATGAGAG AGAAGGGTTT
TGATCGCTCT CCCACCATGT GCACCGATAA GTGGCGCAAC CTCCTGAAGG AGTTCAAGAA GGCCAAGCAC CAGGACCGGG
GAGGCAGTGG CTCTGCTAAG ATGTCGTATT ACAAGGAGAT TGACGAGATC CTCAGAGAGA GGAACAAGAA CGTGCAGTAC
AAGAGCCCCA CTCCTCCGCC AAAGGTTGAT TCTTTCATGC AGTTTGCTGA TAAAGGTATT GATGATACTA GCATCTCTTT
TGGACCTGTA GAAGCTACTG GAAGACCAAC ACTTAATCTT GAGAGAAGTT TGGATCATGA TGGACATCCT CTTGCCATTA
CCACAGCTGA TGCTGTTGCA GCTGGCGGAG TCCCTCCTTG GAATTGGAGA GAGACTTCTG GAAATGGTGG AGAAAGTCAG
TCATGTTGTG GAAGGGTTAT ATCAGTTAAA TGGTGTGATT ATACAAGACG AATAGGTATT GACGGCACTC CAGAAGCCAT
CAAAGAAGCA ATCAGAGCTG CTTTTAGGTT GAGAACTAAA CGCACATTTT GGTTGGAGGA TGAGGACCAG ATTATCCGAA
GTATTGACCG TGAAATGCCT ATTGGAAGTT ACACTCTTCA CCTTGATGAA GGAATGGCCA TTAAATTATG TCTCTATGAC
GAGTCTGAGC ACCTTCCTGT GCATACTGAA GATAAGGTAT TTTACACTGA AAATGATTAC CGTGATTTTC TGACCCGGCG
GGGTTGGGTA TGTCTAAGAG AATTTGACGG ATATAGAAAT ATTGACAATT TGGATGATCT TCGACCTGGT GCTATATATC
GTGGTGTGAG TTGA

[show][hide][copy]PROTEIN

>Vigan.04G425700.01
MYLSEKPRPI DFYKEEGARD MMIEVVSNGE LPPPPPHHPP PMILGESSGE DPEVEIKAPK KRAETWVQDE TRSLIGLRRE
MDALFNTSKS NKHLWEQISA KMREKGFDRS PTMCTDKWRN LLKEFKKAKH QDRGGSGSAK MSYYKEIDEI LRERNKNVQY
KSPTPPPKVD SFMQFADKGI DDTSISFGPV EATGRPTLNL ERSLDHDGHP LAITTADAVA AGGVPPWNWR ETSGNGGESQ
SCCGRVISVK WCDYTRRIGI DGTPEAIKEA IRAAFRLRTK RTFWLEDEDQ IIRSIDREMP IGSYTLHLDE GMAIKLCLYD
ESEHLPVHTE DKVFYTENDY RDFLTRRGWV CLREFDGYRN IDNLDDLRPG AIYRGVS*