VIGGS:GBrowse

Vigan.04G426700.01

Basic Information:

Name:	Vigan.04G426700.01 Multiple alignment Variant Information
Position:	Chr04:53359624..53362511 (- strand)
Length:	2888

Functional Information:

Description:	Similar to protein Iojap-related, mitochondrial-like. [XP_004502322.1, Cicer arietinum]
InterPro:	Protein Iojap/ribosomal silencing factor RsfS (IPR004394)
InterPro:	Oligomerisation domain (IPR025656)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.21,0.07,0.15,0.00,0.00,3.55,0.05
Arabidopsis thaliana homolog:	AT1G67620.1

Automatic updates:

Name:	NM_001250317 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max RsfS domain-containing protein (LOC100500386), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001250584 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500659 (LOC100500659), mRNA; nuclear gene for mitochondrial product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:53359624..53359859 (- strand)
Length:	236
Type:	three_prime_UTR

Position:	Chr04:53359860..53359931 (- strand)
Length:	72
Type:	CDS

Position:	Chr04:53360525..53360622 (- strand)
Length:	98
Type:	CDS

Position:	Chr04:53361988..53362075 (- strand)
Length:	88
Type:	CDS

Position:	Chr04:53362203..53362487 (- strand)
Length:	285
Type:	CDS

Position:	Chr04:53362488..53362511 (- strand)
Length:	24
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G426700.01
GTTTGATTTG AGCGTGGAAC TGGAATGTGG GGGCTTCTTC GAACTAGAAC GTGTTTGCGA TATTCAGAGG CCCTTCTTCT
TCATCAACCA TGGAAGAAGA AGGTAGGGTT CTGTTCTTTG TCCGCCGTTG ACAGCCGTAA TTGCCTTCTG GATCTGCCGG
AGATCGAGAA GGTTCTGACG GATATCAAAG CTGACGACGT TAAGGTGATA CCGGTTCCCA AGCACTGCGA TTGGGCCGAT
TTCATGGTTC TCGCCACTGG CAGGTCCACC TGGCACGTCA AGAACATAGC CCAAGCCCTA ATTTACAAGG CCAAACAGAA
ACAGAGAGGA GCTGAACGAA TGATGCTACC GAGTGTAGAA GGTGAAGAGG GAGGAAAGTG GATAGTCATT GACTCTGGTA
AAGTGATAGT TCATGCACTT GATGAAAAGG CCAGAGCTTA CTACAATTTG GAGGGTCTTT GGACCCGAGG GACAAGTCAA
AATGAACCTG ATGGGGATTT ACAAAAAGCT TTGGTGAAGG TTCGTCGAAA AAACAATTCG AAGAAACCTG CACAAAAGAA
TGCTTAATTG GTGTCTCAAT GTAAACAACC TTTTAAAACT GTAGCTTCTG ACTGCATCTG ATCTAGACAA TTTAGAAGTT
TGTATACATA TCACGGTTTT CTGATCTGTT ATTTTAGTTG TTTTGAATAC AAATTTTGCT AGGGTTGTCT AGCTGCAATG
GTAAAGATAG AAAAGAGGTA ACATTGAAGC TGTCCATCAT CATGCACTCC ACTTTTATTT TTGGTGAGTC ATGAATCGTT
ACC

[show][hide][copy]CDS

>Vigan.04G426700.01
ATGTGGGGGC TTCTTCGAAC TAGAACGTGT TTGCGATATT CAGAGGCCCT TCTTCTTCAT CAACCATGGA AGAAGAAGGT
AGGGTTCTGT TCTTTGTCCG CCGTTGACAG CCGTAATTGC CTTCTGGATC TGCCGGAGAT CGAGAAGGTT CTGACGGATA
TCAAAGCTGA CGACGTTAAG GTGATACCGG TTCCCAAGCA CTGCGATTGG GCCGATTTCA TGGTTCTCGC CACTGGCAGG
TCCACCTGGC ACGTCAAGAA CATAGCCCAA GCCCTAATTT ACAAGGCCAA ACAGAAACAG AGAGGAGCTG AACGAATGAT
GCTACCGAGT GTAGAAGGTG AAGAGGGAGG AAAGTGGATA GTCATTGACT CTGGTAAAGT GATAGTTCAT GCACTTGATG
AAAAGGCCAG AGCTTACTAC AATTTGGAGG GTCTTTGGAC CCGAGGGACA AGTCAAAATG AACCTGATGG GGATTTACAA
AAAGCTTTGG TGAAGGTTCG TCGAAAAAAC AATTCGAAGA AACCTGCACA AAAGAATGCT TAA

[show][hide][copy]PROTEIN

>Vigan.04G426700.01
MWGLLRTRTC LRYSEALLLH QPWKKKVGFC SLSAVDSRNC LLDLPEIEKV LTDIKADDVK VIPVPKHCDW ADFMVLATGR
STWHVKNIAQ ALIYKAKQKQ RGAERMMLPS VEGEEGGKWI VIDSGKVIVH ALDEKARAYY NLEGLWTRGT SQNEPDGDLQ
KALVKVRRKN NSKKPAQKNA *