GBrowse Details

Vigan.04G428400.01

Basic Information:
Name: Vigan.04G428400.01
Multiple alignment
Variant Information
Position: Chr04:53487697..53491286 (+ strand)
Length: 3590
Functional Information:
Description: Similar to Uncharacterized protein. [K7MP90, Glycine max]
GO: Biological Process: protein import into mitochondrial outer membrane (GO:0045040)
Cellular Component: mitochondrial outer membrane translocase complex (GO:0005742)
Molecular Function: protein binding (GO:0005515)
InterPro: Plant specific mitochondrial import receptor subunit TOM20 (IPR010547)
Tetratricopeptide-like helical (IPR011990)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.12,2.29,10.05,3.76,23.49,23.51,9.86,6.85
Arabidopsis thaliana homolog: AT1G27390.1
Automatic updates:
Name: NM_001251093 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527313 (LOC100527313), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:53487697..53487698 (+ strand)
Length: 2
Type: five_prime_UTR
Position: Chr04:53487699..53487860 (+ strand)
Length: 162
Type: CDS
Position: Chr04:53488303..53488381 (+ strand)
Length: 79
Type: CDS
Position: Chr04:53488500..53488669 (+ strand)
Length: 170
Type: CDS
Position: Chr04:53488765..53488812 (+ strand)
Length: 48
Type: CDS
Position: Chr04:53490436..53490519 (+ strand)
Length: 84
Type: CDS
Position: Chr04:53490841..53490966 (+ strand)
Length: 126
Type: CDS
Position: Chr04:53490967..53491286 (+ strand)
Length: 320
Type: three_prime_UTR


>Vigan.04G428400.01
CAATGGACTG CTGGAGTTTG CAGTTGCAGT CACGGGCATT TGGCGTTCTG CGATCACAGA AGGGAATGGA GTATTCTCAA
GATGATTTCG ATCGGTTACT GTTATTCGAG CACACGCGGA AGACCGCTGA AGCAAACTAC GCTAAGAATC CTCTTGACGC
CGATAATCTG ACCAGGTGGG GGGGAGCTCT GATCGAGTTG TCGGCTTTCG AGAAGCCTAA GGATTCTAAG GCGATGATTA
ATGATGCCCT TTCAAAGCTG GAAGAGGCTT TGCTGATCAA TCCAACGAAG CACGACACTC TTTGGTACTT GGGAAATGCA
CACACGTCAT GTGGGTTTCT AACGCCGGAT ATCAGTGAGG CAAAGGATTA TTTTGAGAAG GCACATGAGT ATTTCCAGAA
AGCTTTTGAT GAGGATCCTG AAAATGACCT CTATAGGAAG TCCTTGGAAA TTGCTGTGAA GGCTCCAGAA CTACACATGG
AGATCCATAA TAACGAGCTT GGTCCGATGA GTAATGCGGG ATCCTCTGCT ACTTCAAAAG GAAAGGAATC TAAACGGCAG
AAGAACAGTG ACTTTAAGTA TGACATATTT GGATGGGTTA TTCTTGCGGT GAGTATAGTA GCATGGGTGG GAATGGCCAA
ATCTAACATT CCACCGTCAC CTCCTAGATA AACATTTTTC TTTGATGCTT TACCTAAGAA ATTGGTGATA GGTTGTGTAC
TTTAGACTGG AACTTGTGTG GTGTCTACTT ACTGACTTCA TTTATCATTA ACTTATTTTT TTGCCGTCCA AAAGATTGGC
TTTTTAAGAA TGCCGCTTTT TTAGCATAAG TCGTCAAAGT TTCTCCATAC TGATTTCATT TGTCACTTTT TATGTCGACA
GCCTGATTTC ATTTATTTCT GTATGTCCTG TTATTTTTAT TTTTATTTTT GTAAGATTGT TAATCACTGT ACAATGGTAT
TTTGATACCT AAAATTTTTT ATACCCATTT T

>Vigan.04G428400.01
ATGGACTGCT GGAGTTTGCA GTTGCAGTCA CGGGCATTTG GCGTTCTGCG ATCACAGAAG GGAATGGAGT ATTCTCAAGA
TGATTTCGAT CGGTTACTGT TATTCGAGCA CACGCGGAAG ACCGCTGAAG CAAACTACGC TAAGAATCCT CTTGACGCCG
ATAATCTGAC CAGGTGGGGG GGAGCTCTGA TCGAGTTGTC GGCTTTCGAG AAGCCTAAGG ATTCTAAGGC GATGATTAAT
GATGCCCTTT CAAAGCTGGA AGAGGCTTTG CTGATCAATC CAACGAAGCA CGACACTCTT TGGTACTTGG GAAATGCACA
CACGTCATGT GGGTTTCTAA CGCCGGATAT CAGTGAGGCA AAGGATTATT TTGAGAAGGC ACATGAGTAT TTCCAGAAAG
CTTTTGATGA GGATCCTGAA AATGACCTCT ATAGGAAGTC CTTGGAAATT GCTGTGAAGG CTCCAGAACT ACACATGGAG
ATCCATAATA ACGAGCTTGG TCCGATGAGT AATGCGGGAT CCTCTGCTAC TTCAAAAGGA AAGGAATCTA AACGGCAGAA
GAACAGTGAC TTTAAGTATG ACATATTTGG ATGGGTTATT CTTGCGGTGA GTATAGTAGC ATGGGTGGGA ATGGCCAAAT
CTAACATTCC ACCGTCACCT CCTAGATAA

>Vigan.04G428400.01
MDCWSLQLQS RAFGVLRSQK GMEYSQDDFD RLLLFEHTRK TAEANYAKNP LDADNLTRWG GALIELSAFE KPKDSKAMIN
DALSKLEEAL LINPTKHDTL WYLGNAHTSC GFLTPDISEA KDYFEKAHEY FQKAFDEDPE NDLYRKSLEI AVKAPELHME
IHNNELGPMS NAGSSATSKG KESKRQKNSD FKYDIFGWVI LAVSIVAWVG MAKSNIPPSP PR*