GBrowse Details

Vigan.04G429400.01

Basic Information:
Name: Vigan.04G429400.01
Multiple alignment
Variant Information
Position: Chr04:53549116..53555641 (+ strand)
Length: 6526
Functional Information:
Description: Similar to uncharacterized LOC101214536. [XP_004159692.1, Cucumis sativus]
InterPro: Uncharacterised protein family UPF0250 (IPR007454)
YbeD-like domain (IPR027471)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.31,3.51,2.83,12.72,2.17,6.51,1.63,2.80
Arabidopsis thaliana homolog: AT1G27385.4
Automatic updates:
Name: NM_001251197 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499928 (LOC100499928), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254060 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100795278 (LOC100795278), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:53549116..53551997 (+ strand)
Length: 2882
Type: five_prime_UTR
Position: Chr04:53551998..53552268 (+ strand)
Length: 271
Type: CDS
Position: Chr04:53552363..53552466 (+ strand)
Length: 104
Type: CDS
Position: Chr04:53552614..53552727 (+ strand)
Length: 114
Type: CDS
Position: Chr04:53555118..53555201 (+ strand)
Length: 84
Type: CDS
Position: Chr04:53555374..53555430 (+ strand)
Length: 57
Type: CDS
Position: Chr04:53555431..53555641 (+ strand)
Length: 211
Type: three_prime_UTR


>Vigan.04G429400.01
TAAAAAGTTA ATATTTATCA TTAAGTGTTA CCTTAACTTA ACACCCAAGT CCTTAGACTA AAAAATGAGG AAATAAATAA
ATCAAGGGAA AGAACATGAG CAAACAGGGC TTTGGTGGAC AAGACTAAAA TTGATACGAA GCAACAATCC CTTAAAATAT
AACTAATAAA TCATATTTTG TTTCATGACC TGATACAACA ATTTTTCTCT TTGAAAGAAA AGACTACTCA AAAAACTTGT
CTGATATTAA TGTTGATTCT AGAAGTTTGG ATGTATTTTA AGAAACAGAG ATCATCTTCA TGCGTCAACC GTGTCTCGAG
ATGGCCTATT TCAGCATTTT CTTCATCTGT GAAGATTCGA GGAACCCCTG CGATATTGAT GAAACCAATT CCCAGTAGTT
AGACAAAATT TTGAAACTGC ACAAGTCAGC ATAATAACTC AGTCATAAAT TACACATGTT CATTCCCAGC GATAAACTTT
ATTCAAGTGA AACCAATCAC TTAATTTTAA AATTTCAAAT GATCATATGA ACCACTTTGA TCGAGTACGT GTTTGTTTTA
CTTTAAATAC ACATTATGAT GCACATTCAA CATGAAGGAG TCTCTCATAA ACTCAATGTC AATTCAAACA CACCCTTAAT
ATTTCACAAA CTAAGTTCAT AGGAGATGGT TACCATGAAA GCATTCCCTT GCATCTCCAG CCATAAGAAC CACATCGCCA
CTTCGAAGGA ACATTGCCAG AGGAGTATCC TCTCTGGATT TTCCTCCCAA AAGAAATATA GCCTTGCAAC ACAGACTAAC
CAAGGGGGGC AGCAAACGAA TTAGGATGCA AAAACAAGTT AACCACAAAA CAGAACATTC AAAAGAACGT AGAATAATAC
CTTAAACTAA CTATAGGCTT GCTCCAATCT GCTTCCATGT CATCAAGGTG ACCACCCAGC GTGTCCCCTG GAATAATACC
AAATAAAAAA CAAATATGAA GCAGACTGTT CTAAAAAATT GTTAAAAATG TTTTTTTTCC TTCTCATGAA CTGGAAAATA
TCTGCTGATG AAAGAAAACA ACAATTTCTC GCTTACCAAT GGTATGAAGA ATTTTTTTGC TGGCAGTAGC CATAGTATCA
GAGTAAAGTG TAGAAAAGGA CTCGGGGAAC TATTACAAGT CTGAATTCAT AATAAATATT TCCTTTAAGT TATACCTGAA
CCAAAGTAAT TCACAATTGC AGCTTCAGGT CTGAATTCAA CACCAGCAGG TAAAGCAGGC TTGGCCAATT GTTTGGCAAG
TTCACACAGT GGTTCAGGGA TTTTGTTATG TGGGAGAGAC ATATCGTAAT TCCGCTGCAC ACAAACGTAG TAATAAGTAA
TTTCAATGAA TATCAACAGG TATGACTCTT TTAGGAAACT GAAACTAAAT TATAAGTCAG TAAAGATTTA CTGGTACACA
GGTAGGCTAT GCAACCATAA TAACTCTAGC CAAAAAGGTT TAGTCTGACA TCTTTAGATC AGGGCAGAAA GAATTTCTAC
CGGCTAGCAA AATTTAAGAT ACATGTCAAG CAACCTTATA ATAACAATCT TTAACACAGA AACTAATTGA TTGAGACGTA
ACAAGTCCTC CACTGATATT CAAGCACGAT ATTGAACATG TGGTCTAGTT CTTAAAGCAA ATGTCCAATA TCTCATTCAC
ACAACTACAA AAATCGTTTA TCTCAAGCTA AAAACAGATG TAAGCAAAGC AGTAGATCAT GTGTAAGCAA TAACCAGCTG
CAAGGTCTCC AAAGCAAAAA AAAAAAGTCT GATAACATAC TTTGGTAAGA ACAAAATACA CCCACAACTA AATTTTAATT
GTTTTGGAGA GAAGCAGAAT TGATTCACTG AAAAATATTT AAAATGGTGA ATCAAAACTT ACCTTGGACC AATCAAACTG
CAGGCCCAGG GTGCTCCATC GTAACTTCCG AAGCAACGCA GAAGCAGAAA CGGATTTGCA CTTTCTCAAA GACGCTTCCT
TTTGGGTAGT AAATTTCCAT TCCTTACAAT CTCCATTATC TATATCAGCA CCAGTTTCTG ATGAAGAAAT TGGAGAGTTG
TCTTCGACCA AAACTTTCCC TTCCTTAGCA GCACCAAAAA CATCCTGAAT TGGACCATAC ATGGCATTGT GATTTGTTCT
GTTAGGGGGC TGCGGAAAAT CAGTCAAACT CTCCTTTATC AAACTACACT GTTCCTCAAT GGTTAATGCT CCAGGAATAA
AATAAAAGCC TGCAAATTAA TCATCAGAGA GTGTTGTTGA GTTCTTTAGT TACTCATACA CGAACTAGCT AGTTAAACGA
CAAATAATAA TAAAAGAAAA AGAAAATACC TGGGCGATTT TGCAAAGAGA AAACCGGAGA GGTGAAGTTC TCGTGGAGAA
CAATAACACC CGGAGGAAGT GCACCGCTTT GAAGATAGCA TTCTAGAATA GATCTGAAGT CAAGAACCTC CGTTAAATCC
ACTGGTTTAG GTTGTTTTTT CCTGTTGAAA AAGAAAAATG AATTGCAATT TGAATTTGAG GACTTAAAAC TGAAACAAAC
AACGATCAAA GGAAAAAAAA AAACAATTGA ATACTTTTTG TTCTTGGAAG ATGCATTGTT GTCGTAGTAA AGCTTGTATT
TCTTCTCTGC TCTTCTGAAA GCGGTTCGCT CAGAATCATC GCGGTTATTC TCCGATCCGT ACATCGGCAG AGGGAAAACT
CAAAAGAGGA TTAGGGTTTT TGATTTTTTT TTAACTCAAG AAAAAATTTA AATTATTAAA ATGAAAAAGA CAATAAGATC
CTGGAATGAA CGCCTGTGGC AGGGGCATTA CTGAGAATTC ACATTGGTCC TTATCGAAAA AAATCTGTGT TTTGCGAGGG
TGATGGAGAT GCTTATATGC ATTGCTACTC CGAATTTATC GTATGTTACG GAAACTAGAC AGAAAAAAAT GGCGTGCAGG
AGCATGCTTC GTTCATGGAT TCTCGCGGAG CCGTTTCAAT TCCAAAATCT TCATTTGAAT TATAACAGAG GCGTTAGGGC
AGGTCCGTTT CGCCGTGGCA GAGGAGTAAC CCTTCGTTGC TGCCACAGCG AGACGCCGTC GTCTCAGGAC GATCAAGGTC
CGCCTCAAGA GGCGGTGTTG AAGGCCATTT CCGAGGTGTC TAAGGCGGAA GGGAGGGTTG GGCAAACTAC GAATATGGTT
ATTGGAGGTA CTGTGTCGGA TGATTCTACC AATGAATGGC TCACTTTGGA CCAGAAGGTG AACTCATACC CAACTGTTCG
AGGATTCACT GCAATAGGAA CGGGAGGTGA GGATTTTGTG CAAGCCATGG TTGTTGCCGT GGAATCCGTA ATACAGCAGC
CTATTCCTCA GGGACGTGTG AAGCAGAAGT TATCTGCAAG AGGCAAATAT GTATCTGTAA ATATTGGGCC TATACAAGTT
GATTCTAGTG AACAGGTCCA AGCTGTATAT AATGCCATGA GGAGGGATGA CAGGATGAAA TATTTTTTGT AGTATTAGAT
TTTGTATAGA ATGATGTGTT TCCAGGGGAT GAATTTACAC GTCTGCCTTG AAGTGGTTAG GCGGATTTTG TTCTTTGATT
AACCCATCAT ATATCATTGC AATCATTATG CAAATTTGAC CTCTGCTGTA TCTTAGGAAG ATGTAATGTG ATTATTATGA
TTTATTACCC ATAGTTATAA TGTTATATAC ATTATATCCT AGT

>Vigan.04G429400.01
ATGGAGATGC TTATATGCAT TGCTACTCCG AATTTATCGT ATGTTACGGA AACTAGACAG AAAAAAATGG CGTGCAGGAG
CATGCTTCGT TCATGGATTC TCGCGGAGCC GTTTCAATTC CAAAATCTTC ATTTGAATTA TAACAGAGGC GTTAGGGCAG
GTCCGTTTCG CCGTGGCAGA GGAGTAACCC TTCGTTGCTG CCACAGCGAG ACGCCGTCGT CTCAGGACGA TCAAGGTCCG
CCTCAAGAGG CGGTGTTGAA GGCCATTTCC GAGGTGTCTA AGGCGGAAGG GAGGGTTGGG CAAACTACGA ATATGGTTAT
TGGAGGTACT GTGTCGGATG ATTCTACCAA TGAATGGCTC ACTTTGGACC AGAAGGTGAA CTCATACCCA ACTGTTCGAG
GATTCACTGC AATAGGAACG GGAGGTGAGG ATTTTGTGCA AGCCATGGTT GTTGCCGTGG AATCCGTAAT ACAGCAGCCT
ATTCCTCAGG GACGTGTGAA GCAGAAGTTA TCTGCAAGAG GCAAATATGT ATCTGTAAAT ATTGGGCCTA TACAAGTTGA
TTCTAGTGAA CAGGTCCAAG CTGTATATAA TGCCATGAGG AGGGATGACA GGATGAAATA TTTTTTGTAG 

>Vigan.04G429400.01
MEMLICIATP NLSYVTETRQ KKMACRSMLR SWILAEPFQF QNLHLNYNRG VRAGPFRRGR GVTLRCCHSE TPSSQDDQGP
PQEAVLKAIS EVSKAEGRVG QTTNMVIGGT VSDDSTNEWL TLDQKVNSYP TVRGFTAIGT GGEDFVQAMV VAVESVIQQP
IPQGRVKQKL SARGKYVSVN IGPIQVDSSE QVQAVYNAMR RDDRMKYFL*