GBrowse Details

Vigan.04G431600.01

Basic Information:
Name: Vigan.04G431600.01
Multiple alignment
Variant Information
Position: Chr04:53673272..53674468 (+ strand)
Length: 1197
Functional Information:
Description: Similar to Os05g0569500 protein. [Q0DFU5, Oryza sativa subsp. japonica]
InterPro: Protein of unknown function DUF1264 (IPR010686)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:283.84,88.97,0.35,0.04,0.00,1007.79,0.12,0.19
Arabidopsis thaliana homolog: AT1G05510.1
Automatic updates:
Name: NM_001250520 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306351 (LOC100306351), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:53673272..53673277 (+ strand)
Length: 6
Type: five_prime_UTR
Position: Chr04:53673278..53673411 (+ strand)
Length: 134
Type: CDS
Position: Chr04:53673650..53674053 (+ strand)
Length: 404
Type: CDS
Position: Chr04:53674136..53674323 (+ strand)
Length: 188
Type: CDS
Position: Chr04:53674324..53674468 (+ strand)
Length: 145
Type: three_prime_UTR


>Vigan.04G431600.01
CAAAAAATGT CGACCAACGA CGACCACCCA CAAGTTCTTG ACGGCGAGCC AACTCAAACA GGCACCTACC TCCGTGACAC
TGCCACATCT GTTATCCAAA ACTTCGACCC CATAAACAAA ATCCACCAAC ATCTTTGCGC GTTTCACTTT TACTCTCATG
ACATGACCCG ACAAGTGGAG GCACACCACT ATTGTGCGCA CAAGAACGAG GAGATGAGGC AGTGTCTGAT ATACGACAGC
CCCGAGAAGA AAGCGAGGCT TATAGGGCTT GAGTACATCA TCTCAGAAAA CCTATACTTA ACACTGCCCG ACGAGGAGAA
GCCTCTCTGG CACTCTCACT TGTACGAGGT CAAGAGTGGT CTCCTCTTCA TGCCTAAGGT TCCTGCTCCC ATTCAGCGCC
GAGACATGGA GACAGTCTGC AAGACTTACG GCAAAGTTTT CCATTTCTGG CAAGTGGACA AGGGTCACTC CCTCCCATTT
GGGATACCTC AGCTCATGAT GGCTTTCACT AGAGATGGCC AGATCTATGA TCACCTAGTC AAAAGTTGTG CAGAGCGGAT
GGGGATAGAC TATGATGAAG AAAGAAAAGG AAGGGAATAT ATGACAGGGC CAGAACATGG AATTCATCCA TTGGCCAATG
GAGGGGGTAA GGGTCTTGAG ACTCGCCTCA GGGAGGTCGA CCTCAACGCC GATTCTACTC CGCCGTCAGC CACCAGGGTC
TCTGTTGTCT GAACATCCTC TGTGTTTTCT AAACATGTTA TGCTTAGATA TTACAGGGAC ACCCTTTCTA ACTCTATTAT
AAACATAATG TAATATGTTT TAATGTCATA TCATAATAAA AATGTTTTAT CTATATGTTT CCTGTGACTG ATTCTCT

>Vigan.04G431600.01
ATGTCGACCA ACGACGACCA CCCACAAGTT CTTGACGGCG AGCCAACTCA AACAGGCACC TACCTCCGTG ACACTGCCAC
ATCTGTTATC CAAAACTTCG ACCCCATAAA CAAAATCCAC CAACATCTTT GCGCGTTTCA CTTTTACTCT CATGACATGA
CCCGACAAGT GGAGGCACAC CACTATTGTG CGCACAAGAA CGAGGAGATG AGGCAGTGTC TGATATACGA CAGCCCCGAG
AAGAAAGCGA GGCTTATAGG GCTTGAGTAC ATCATCTCAG AAAACCTATA CTTAACACTG CCCGACGAGG AGAAGCCTCT
CTGGCACTCT CACTTGTACG AGGTCAAGAG TGGTCTCCTC TTCATGCCTA AGGTTCCTGC TCCCATTCAG CGCCGAGACA
TGGAGACAGT CTGCAAGACT TACGGCAAAG TTTTCCATTT CTGGCAAGTG GACAAGGGTC ACTCCCTCCC ATTTGGGATA
CCTCAGCTCA TGATGGCTTT CACTAGAGAT GGCCAGATCT ATGATCACCT AGTCAAAAGT TGTGCAGAGC GGATGGGGAT
AGACTATGAT GAAGAAAGAA AAGGAAGGGA ATATATGACA GGGCCAGAAC ATGGAATTCA TCCATTGGCC AATGGAGGGG
GTAAGGGTCT TGAGACTCGC CTCAGGGAGG TCGACCTCAA CGCCGATTCT ACTCCGCCGT CAGCCACCAG GGTCTCTGTT
GTCTGA

>Vigan.04G431600.01
MSTNDDHPQV LDGEPTQTGT YLRDTATSVI QNFDPINKIH QHLCAFHFYS HDMTRQVEAH HYCAHKNEEM RQCLIYDSPE
KKARLIGLEY IISENLYLTL PDEEKPLWHS HLYEVKSGLL FMPKVPAPIQ RRDMETVCKT YGKVFHFWQV DKGHSLPFGI
PQLMMAFTRD GQIYDHLVKS CAERMGIDYD EERKGREYMT GPEHGIHPLA NGGGKGLETR LREVDLNADS TPPSATRVSV
V*