GBrowse Details

Vigan.05G002200.01

Basic Information:
Name: Vigan.05G002200.01
Multiple alignment
Variant Information
Position: Chr05:136643..142324 (+ strand)
Length: 5682
Functional Information:
Description: Similar to Uncharacterized protein. [V4T0F2, Citrus clementina.]
GO: Biological Process: protein phosphorylation (GO:0006468)
Molecular Function: protein kinase activity (GO:0004672)
Molecular Function: protein serine/threonine kinase activity (GO:0004674)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro: Protein kinase domain (IPR000719)
Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
Serine/threonine-protein kinase, active site (IPR008271)
Protein kinase-like domain (IPR011009)
Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:124.03,97.41,52.44,50.47,20.69,37.20,38.63,47.46
Arabidopsis thaliana homolog: AT1G06390.1, AT1G09840.1, AT1G57870.3, AT2G30980.1, AT3G05840.2, AT3G61160.2, AT4G00720.1, AT4G18710.1, AT5G14640.1, AT5G26751.1
Automatic updates:
Name: NM_001253989 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max shaggy-related protein kinase kappa-like (LOC100820098), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254144 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max shaggy-related protein kinase kappa-like (LOC100799387), transcript variant 1, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001399708 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max shaggy-related protein kinase kappa-like (LOC100799387), transcript variant 2, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:136643..136996 (+ strand)
Length: 354
Type: five_prime_UTR
Position: Chr05:136997..137137 (+ strand)
Length: 141
Type: CDS
Position: Chr05:137380..137472 (+ strand)
Length: 93
Type: CDS
Position: Chr05:137599..137658 (+ strand)
Length: 60
Type: CDS
Position: Chr05:137762..138034 (+ strand)
Length: 273
Type: CDS
Position: Chr05:138318..138392 (+ strand)
Length: 75
Type: CDS
Position: Chr05:139628..139684 (+ strand)
Length: 57
Type: CDS
Position: Chr05:139774..139914 (+ strand)
Length: 141
Type: CDS
Position: Chr05:140010..140060 (+ strand)
Length: 51
Type: CDS
Position: Chr05:140466..140561 (+ strand)
Length: 96
Type: CDS
Position: Chr05:141576..141659 (+ strand)
Length: 84
Type: CDS
Position: Chr05:141748..141850 (+ strand)
Length: 103
Type: CDS
Position: Chr05:142000..142088 (+ strand)
Length: 89
Type: CDS
Position: Chr05:142089..142324 (+ strand)
Length: 236
Type: three_prime_UTR


>Vigan.05G002200.01
GAAAAAAAGA AAAAAAAGAA GAAGAAAGAA TTGAAATGGT AAAGTGGGTA TAGGGAAGGT TGAAGAAGGA GGAATAATTG
GTATTATTGT ATAGATGTAA AGGGAAAAGG TGGAATGGAA TAAATAAGAA GAGAGAATGG AAGTGAAGAA GAAGAAGAGA
TGAGAATGGT TGAAAGTGAG AGAGAGTAAG ATGCAATTCC ACTGCTTTCA TTCTCACCAC AAACTGACAC TTCCACTTCA
ACAAGGTCAC TCTCACATCT TCTTTACCAT TATCTTTTTT CCTCTCTCCT CTCTCCATCC ATCTCTCTTC CCTTTTCCCT
TTCCGATTAG ATCTGATCCA ACTCTTCCTC ATCAATGGCC TCCGCTAGCC TCGGAACTGG TGGGGTCGGC AGTTCCAGGT
CCGTTAACGC TGCCTTCAGG GGTTCTTCCA GTTCCGTCGA TTGGCTTGGC AGAGAGATGC TCGAGATGAG ATTGAGAGAC
CACGACGAAG ACAGGGATAG TGAGCCTGAC ATCATCGATG GTGTGGGTGC TGAGACCGGG CACGTGATAA GAACCAGTAT
CGGTGGCCGA AATGGTCAAT CTAAGCAGAA TGTCAGTTAT ATTGCAGAAC ACGTGGTTGG AACAGGCTCT TTTGGTGTTG
TTTTTCAGGC AAAATGTAGA GAAACGGGAG AGATTGTAGC CATCAAGAAG GTTCTCCAGG ACAAGCGCTA CAAGAATAGA
GAGTTACAGA TTATGCAAAT GCTGGATCAT CCAAATATTG TTGCCCTACG ACATTGTTTC TTCTCAACAA CTGACAAAGA
AGAAGTTTAC TTGAATCTTG TCCTTGAATA TGTTCCTGAA ACCGTGAATC GTATCGCAAG GAGCTACAGC AGGATTAACC
AGCGAATGCC TTTGATATAT GTAAAGCTCT ATACCTACCA GATTTGCAGG GCACTTGCTT ATATACATAA CTGCATTGGT
ATATGTCACC GTGACATCAA ACCTCAGAAC CTACTTGTGA ATCCGCATAC TCATCAGCTG AAACTATGTG ATTTTGGTAG
TGCAAAAGTG TTGGTAAAAG GAGAACCAAA CGTTTCTTAC ATCTGTTCAA GATACTACCG TGCTCCGGAA CTTATATTTG
GGGCCACCGA ATATACAACT GCCATAGACA TATGGTCTAC TGGTTGCGTA ATGGCTGAAT TACTCCTTGG ACAGCCATTG
TTTCCTGGAG AGAGTGGAGT TGATCAGCTA GTTGAAATCA TCAAGGTTTT GGGAACTCCA ACTAGGGAGG AGATAAAGTG
CATGAACCCT AATTATACTG AGTTTAAGTT TCCACAGATA AAACCTCATC CATGGCACAA GGTCTTTCAG AAACGTTTAC
CCCCGGAAGC AGTGGATCTT GTCTGTAGGT TCTTTCAGTA CTCTCCCAAT TTGAGATGCA CTGCGTTGGA GGCTTGCATT
CATCCCTTTT TTGATGAATT GAGGGACCCG AACACCCGTC TTCCTAATGG TCGACCACTT CCTCCACTTT TCAATTTTAA
ATCTCAGGAA CTTTCTGGCA TACCCCCTGA TGTCATCAAT CTTCTTATTC CAGAGCATGC GCGTAAACAG AACTTATTTA
TGGCTTTGCA CACTTAGCTA TTTTACTCTC TAAGTTGTCG TCATTTTCTA GCAGCCTGTA AATTATCTGG TGCATCTGAG
AAAAACTCCA CAGAAAGAGT TCTTAGAATT ATATTTTATT ATATATAATA TAATATATAA CGTTTTTTTT TTCTTTTTGA
AATTTTATTG TCAAAAGGAG TTGTTTTTCT ATTCTGGTTG AGGAGACGTT TTCATGTATA TTTATGTCAT ACGTGTGCCA
CTGCTTATTC GAA

>Vigan.05G002200.01
ATGGCCTCCG CTAGCCTCGG AACTGGTGGG GTCGGCAGTT CCAGGTCCGT TAACGCTGCC TTCAGGGGTT CTTCCAGTTC
CGTCGATTGG CTTGGCAGAG AGATGCTCGA GATGAGATTG AGAGACCACG ACGAAGACAG GGATAGTGAG CCTGACATCA
TCGATGGTGT GGGTGCTGAG ACCGGGCACG TGATAAGAAC CAGTATCGGT GGCCGAAATG GTCAATCTAA GCAGAATGTC
AGTTATATTG CAGAACACGT GGTTGGAACA GGCTCTTTTG GTGTTGTTTT TCAGGCAAAA TGTAGAGAAA CGGGAGAGAT
TGTAGCCATC AAGAAGGTTC TCCAGGACAA GCGCTACAAG AATAGAGAGT TACAGATTAT GCAAATGCTG GATCATCCAA
ATATTGTTGC CCTACGACAT TGTTTCTTCT CAACAACTGA CAAAGAAGAA GTTTACTTGA ATCTTGTCCT TGAATATGTT
CCTGAAACCG TGAATCGTAT CGCAAGGAGC TACAGCAGGA TTAACCAGCG AATGCCTTTG ATATATGTAA AGCTCTATAC
CTACCAGATT TGCAGGGCAC TTGCTTATAT ACATAACTGC ATTGGTATAT GTCACCGTGA CATCAAACCT CAGAACCTAC
TTGTGAATCC GCATACTCAT CAGCTGAAAC TATGTGATTT TGGTAGTGCA AAAGTGTTGG TAAAAGGAGA ACCAAACGTT
TCTTACATCT GTTCAAGATA CTACCGTGCT CCGGAACTTA TATTTGGGGC CACCGAATAT ACAACTGCCA TAGACATATG
GTCTACTGGT TGCGTAATGG CTGAATTACT CCTTGGACAG CCATTGTTTC CTGGAGAGAG TGGAGTTGAT CAGCTAGTTG
AAATCATCAA GGTTTTGGGA ACTCCAACTA GGGAGGAGAT AAAGTGCATG AACCCTAATT ATACTGAGTT TAAGTTTCCA
CAGATAAAAC CTCATCCATG GCACAAGGTC TTTCAGAAAC GTTTACCCCC GGAAGCAGTG GATCTTGTCT GTAGGTTCTT
TCAGTACTCT CCCAATTTGA GATGCACTGC GTTGGAGGCT TGCATTCATC CCTTTTTTGA TGAATTGAGG GACCCGAACA
CCCGTCTTCC TAATGGTCGA CCACTTCCTC CACTTTTCAA TTTTAAATCT CAGGAACTTT CTGGCATACC CCCTGATGTC
ATCAATCTTC TTATTCCAGA GCATGCGCGT AAACAGAACT TATTTATGGC TTTGCACACT TAG

>Vigan.05G002200.01
MASASLGTGG VGSSRSVNAA FRGSSSSVDW LGREMLEMRL RDHDEDRDSE PDIIDGVGAE TGHVIRTSIG GRNGQSKQNV
SYIAEHVVGT GSFGVVFQAK CRETGEIVAI KKVLQDKRYK NRELQIMQML DHPNIVALRH CFFSTTDKEE VYLNLVLEYV
PETVNRIARS YSRINQRMPL IYVKLYTYQI CRALAYIHNC IGICHRDIKP QNLLVNPHTH QLKLCDFGSA KVLVKGEPNV
SYICSRYYRA PELIFGATEY TTAIDIWSTG CVMAELLLGQ PLFPGESGVD QLVEIIKVLG TPTREEIKCM NPNYTEFKFP
QIKPHPWHKV FQKRLPPEAV DLVCRFFQYS PNLRCTALEA CIHPFFDELR DPNTRLPNGR PLPPLFNFKS QELSGIPPDV
INLLIPEHAR KQNLFMALHT *