GBrowse Details

Vigan.05G011700.01

Basic Information:
Name: Vigan.05G011700.01
Multiple alignment
Variant Information
Position: Chr05:720496..722817 (- strand)
Length: 2322
Functional Information:
Description: Similar to mRNA turnover protein 4 homolog. [XP_004485517.1, Cicer arietinum]
GO: Biological Process: ribosome biogenesis (GO:0042254)
Cellular Component: intracellular (GO:0005622)
InterPro: Ribosomal protein L10/acidic P0 (IPR001790)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.09,18.15,28.26,19.24,40.41,37.90,33.48,26.74
Arabidopsis thaliana homolog: AT1G25260.1
Structure :
Position: Chr05:720496..720952 (- strand)
Length: 457
Type: three_prime_UTR
Position: Chr05:720953..721069 (- strand)
Length: 117
Type: CDS
Position: Chr05:721467..721543 (- strand)
Length: 77
Type: CDS
Position: Chr05:721628..721718 (- strand)
Length: 91
Type: CDS
Position: Chr05:721873..721933 (- strand)
Length: 61
Type: CDS
Position: Chr05:722191..722249 (- strand)
Length: 59
Type: CDS
Position: Chr05:722338..722594 (- strand)
Length: 257
Type: CDS
Position: Chr05:722719..722746 (- strand)
Length: 28
Type: CDS
Position: Chr05:722747..722817 (- strand)
Length: 71
Type: five_prime_UTR


>Vigan.05G011700.01
CAAAACCAAA ACCCTACAAC GAGAAGTCGC AACAGCGAAA GGGTTAAGCA AAGAGAAAGA AGAACTTCAA AATGCCGAAG
TCGAAGAGAA ATAAACAAGT TACGCTATCG AAGACGAAGA AGAAGGGAAG GGATCATAAA GAGGCGATTG TGAATGGAAT
AAAGGAGGCT GCAGAAAAGT ACGAGTGCGT ATACGTGTTC TCGTTCGAGA ACATGAGGAA TCAGAAATTC AAGGAGTTTA
GGGAACAGTT GAAATCTAGT AGCAGGTTCT TTCTTGGCTC TAACAAGGTA ATGCAAGTTG CCTTAGGTCG CTCCGCCGCC
GATGAGATCA GTCCCGGCAT TCATAAGGTT TCAAAGCTAT TGCGCGGAGA TGCTGGCATG GTTTTTACGA ATTTGTCTAA
GGAAGAGGTT GAAAGGCTGT TTAAGGAATT TGAAGAATAC GATTTTGCAA GAACAGGAAG CCTTGCCACG GAAAAGGTTG
ATCTCAAAGA GGGACCCTTG GAGCAGTTTA CGCATGAGAT GGAACCTTTT CTACGAAAGC AAGGCATGCC TGTTCGATTA
AACAAAGGAG TTGTGGAGCT TGTTTCCGAT TTTGTTGTTT GTGAGGAAGG GAAGTCATTG TCACCTGAAG CTGCTCGTAT
ACTGCGTTTA ATGGGAATCA AGATGGCTAC ATTTCGTCTT CACCTAATTT GCAGGTGGAG TCGTGATGAC TTTGAGCTAT
ACATCGATGG ACCGGATGAA TCAGATGTTG AATGCTCATA GTACCTCTTT TAAATTTAGA AGATTCATGG AGCATCCCTC
TAAAAAAAGT TTGAACATTA CGAGATATCA CGCAAATGTG ATTTGAAGCT ACAGTCTCAT AGGGATTATT GCATAATGTA
TTTTAAGATG AGTTGATTTT TGGGAATGTT TAGGAATTCT GTGAACTAGG TTGCGTGGTT AACAAGGAAG TGGTGTTATC
TGTAACTTTA TGAAAAAACT CAAATTACTG TGATTCAGTT TTGATCTATT TAGATTTTTG TCTGCGGATA TATATTTATT
TTTATTAAAT CACTTGGATG GAGCTCACTC TCGAAAGTTC CAATTTTTAA TGGTATGATT TTTGGTTTAT ATATTCTATC
ATGGAGAGTA TTCAATCTGG TCCACGGATC TAATGAATGG ATTAAAAACA TCTAGACACA AAAGCATAAC ATAAAATGGG
TTAAGGCCTC AATAGTTT

>Vigan.05G011700.01
ATGCCGAAGT CGAAGAGAAA TAAACAAGTT ACGCTATCGA AGACGAAGAA GAAGGGAAGG GATCATAAAG AGGCGATTGT
GAATGGAATA AAGGAGGCTG CAGAAAAGTA CGAGTGCGTA TACGTGTTCT CGTTCGAGAA CATGAGGAAT CAGAAATTCA
AGGAGTTTAG GGAACAGTTG AAATCTAGTA GCAGGTTCTT TCTTGGCTCT AACAAGGTAA TGCAAGTTGC CTTAGGTCGC
TCCGCCGCCG ATGAGATCAG TCCCGGCATT CATAAGGTTT CAAAGCTATT GCGCGGAGAT GCTGGCATGG TTTTTACGAA
TTTGTCTAAG GAAGAGGTTG AAAGGCTGTT TAAGGAATTT GAAGAATACG ATTTTGCAAG AACAGGAAGC CTTGCCACGG
AAAAGGTTGA TCTCAAAGAG GGACCCTTGG AGCAGTTTAC GCATGAGATG GAACCTTTTC TACGAAAGCA AGGCATGCCT
GTTCGATTAA ACAAAGGAGT TGTGGAGCTT GTTTCCGATT TTGTTGTTTG TGAGGAAGGG AAGTCATTGT CACCTGAAGC
TGCTCGTATA CTGCGTTTAA TGGGAATCAA GATGGCTACA TTTCGTCTTC ACCTAATTTG CAGGTGGAGT CGTGATGACT
TTGAGCTATA CATCGATGGA CCGGATGAAT CAGATGTTGA ATGCTCATAG 

>Vigan.05G011700.01
MPKSKRNKQV TLSKTKKKGR DHKEAIVNGI KEAAEKYECV YVFSFENMRN QKFKEFREQL KSSSRFFLGS NKVMQVALGR
SAADEISPGI HKVSKLLRGD AGMVFTNLSK EEVERLFKEF EEYDFARTGS LATEKVDLKE GPLEQFTHEM EPFLRKQGMP
VRLNKGVVEL VSDFVVCEEG KSLSPEAARI LRLMGIKMAT FRLHLICRWS RDDFELYIDG PDESDVECS*