GBrowse Details

Vigan.05G015100.01

Basic Information:
Name: Vigan.05G015100.01
Multiple alignment
Variant Information
Position: Chr05:954106..956769 (+ strand)
Length: 2664
Functional Information:
Description: Similar to Peroxidase. [Q9XFI7, Glycine max]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: peroxidase activity (GO:0004601)
Molecular Function: heme binding (GO:0020037)
InterPro: Plant peroxidase (IPR000823)
Haem peroxidase, plant/fungal/bacterial (IPR002016)
Haem peroxidase (IPR010255)
Peroxidases heam-ligand binding site (IPR019793)
Peroxidase, active site (IPR019794)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.38,5.07,3.24,0.26,25.88,1.81,34.00,0.62
Arabidopsis thaliana homolog: AT4G25980.1
Automatic updates:
Name: NM_001361043 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxidase 43 (PRX3), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:954106..954149 (+ strand)
Length: 44
Type: five_prime_UTR
Position: Chr05:954150..954353 (+ strand)
Length: 204
Type: CDS
Position: Chr05:954456..954638 (+ strand)
Length: 183
Type: CDS
Position: Chr05:954749..954911 (+ strand)
Length: 163
Type: CDS
Position: Chr05:956036..956460 (+ strand)
Length: 425
Type: CDS
Position: Chr05:956461..956769 (+ strand)
Length: 309
Type: three_prime_UTR


>Vigan.05G015100.01
CTTATAACTA GTTATATTTC ATATACAGAG TTGCACTCGC AGTGATGACG GTGCTCTTAG TTCTGTCTCT CTTATTCTTC
TCATTCTTAA TGGGTTGTTC TGATGGTCAG CTTGAGGTAG GGTTCTACTC CAACACTTGT CCTCAGGTAG ATTCCGTTGT
CCGTGACGTT GTTAGAGAAG CTGCTCTCTC TGATACCAAC ATGGCTGCTG TCTTGCTCAG ACTTCATTTT CATGACTGCT
TTGTTGAGGG TTGTGATGGT TCAATTCTGA TTGAGAATGG TCCAGAATCA GAGAGACACG CATTTGGACA TCAAGGGGTT
AGAGGGTTTG ATGTGATAGA AAAAGCCAAG GCAGAATTGG AAGGATCTTG TCCTGGTGTG GTTTCTTGTG CAGACATAGT
GGCATTGGCA GCTAGAGAGG CTATTGTTTT GGCGAATGGA CCAACATATG AAGTTCCAAC AGGGAGGAGA GATGGGTTGG
TTTCAAATGT TTCTCTTGCA GATGACATGC CAGATGTTAG TGATTCAATT GAGCTACTCA AGACCAAGTT TCTGAACAAG
GGTCTCACAG TGAAAGACCT TGTTCTTCTC AGTGGTGCAC ATACAATTGG AACCACAGCA TGCTTCTTTA TGACTAAAAG
ACTGTACAAC TTTTTTCCAA GTGGTGGAGG ATCAGACCCA TCAATCAGTC CAAATTTTCT CCCACAGTTG CAAGCAAAGT
GCCCTCAGAA TGGAGATGTT AATGTTAGGC TAGCCATTGA CGAGGGCAGT GAGCAGAATT TTGACGTACA CATTCTGAAG
AACATAAAGG AAGGTTTTGC TGTGTTAGAA TCTGATGCCA GACTCAATGA TGACATAGCC ACAAAGAATG TCATTGACTC
TTACTTTTCT CCCTTGGGTC CAATGTTTGA GCCTTCTTTT GAAGCTGATT TTGTTGATTC ATTCGTGAGG ATGGGCCAAA
TTGGTGTCAA GACAGGATTC CTTGGAGAAA TCAGGACAGT GTGTTCACAA TTCAATTGAA GTAAATAAGC AACCAATAAT
GAAGTGATTT ATGGCTTCTG GTTTTGTTAT TTTTTAGGTG GAAAGCTTCC TCTGCTTTAT ATTCTAAATT CATACGTTCT
TATTGTTTGT GTTTTCAACT TCTCAATGGG CACTTCATTT GTGTAAAGGA TCACACCTCT AGCTTGTTTG GTTTGGGTAA
ATTTGTGTAA ATGTTAACTG AGGTTTAAGG TTGTTTTTTA GTTAATGTGG GTTGATGGAG TCCGTGGATT CAATATTTGC
TTCATATTGG TAATATCATT TTGCCATGAA TAATGTTGCA GTGTTTAA

>Vigan.05G015100.01
ATGACGGTGC TCTTAGTTCT GTCTCTCTTA TTCTTCTCAT TCTTAATGGG TTGTTCTGAT GGTCAGCTTG AGGTAGGGTT
CTACTCCAAC ACTTGTCCTC AGGTAGATTC CGTTGTCCGT GACGTTGTTA GAGAAGCTGC TCTCTCTGAT ACCAACATGG
CTGCTGTCTT GCTCAGACTT CATTTTCATG ACTGCTTTGT TGAGGGTTGT GATGGTTCAA TTCTGATTGA GAATGGTCCA
GAATCAGAGA GACACGCATT TGGACATCAA GGGGTTAGAG GGTTTGATGT GATAGAAAAA GCCAAGGCAG AATTGGAAGG
ATCTTGTCCT GGTGTGGTTT CTTGTGCAGA CATAGTGGCA TTGGCAGCTA GAGAGGCTAT TGTTTTGGCG AATGGACCAA
CATATGAAGT TCCAACAGGG AGGAGAGATG GGTTGGTTTC AAATGTTTCT CTTGCAGATG ACATGCCAGA TGTTAGTGAT
TCAATTGAGC TACTCAAGAC CAAGTTTCTG AACAAGGGTC TCACAGTGAA AGACCTTGTT CTTCTCAGTG GTGCACATAC
AATTGGAACC ACAGCATGCT TCTTTATGAC TAAAAGACTG TACAACTTTT TTCCAAGTGG TGGAGGATCA GACCCATCAA
TCAGTCCAAA TTTTCTCCCA CAGTTGCAAG CAAAGTGCCC TCAGAATGGA GATGTTAATG TTAGGCTAGC CATTGACGAG
GGCAGTGAGC AGAATTTTGA CGTACACATT CTGAAGAACA TAAAGGAAGG TTTTGCTGTG TTAGAATCTG ATGCCAGACT
CAATGATGAC ATAGCCACAA AGAATGTCAT TGACTCTTAC TTTTCTCCCT TGGGTCCAAT GTTTGAGCCT TCTTTTGAAG
CTGATTTTGT TGATTCATTC GTGAGGATGG GCCAAATTGG TGTCAAGACA GGATTCCTTG GAGAAATCAG GACAGTGTGT
TCACAATTCA ATTGA

>Vigan.05G015100.01
MTVLLVLSLL FFSFLMGCSD GQLEVGFYSN TCPQVDSVVR DVVREAALSD TNMAAVLLRL HFHDCFVEGC DGSILIENGP
ESERHAFGHQ GVRGFDVIEK AKAELEGSCP GVVSCADIVA LAAREAIVLA NGPTYEVPTG RRDGLVSNVS LADDMPDVSD
SIELLKTKFL NKGLTVKDLV LLSGAHTIGT TACFFMTKRL YNFFPSGGGS DPSISPNFLP QLQAKCPQNG DVNVRLAIDE
GSEQNFDVHI LKNIKEGFAV LESDARLNDD IATKNVIDSY FSPLGPMFEP SFEADFVDSF VRMGQIGVKT GFLGEIRTVC
SQFN*