GBrowse Details

Vigan.05G018300.01

Basic Information:
Name: Vigan.05G018300.01
Multiple alignment
Variant Information
Position: Chr05:1190436..1196017 (- strand)
Length: 5582
Functional Information:
Description: Similar to Beta-hydroxyacyl-ACP dehydratase. [E6Y9A5, Arachis hypogaea]
GO: Biological Process: fatty acid biosynthetic process (GO:0006633)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: hydro-lyase activity (GO:0016836)
InterPro: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (IPR010084)
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (IPR013114)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.92,0.84,31.06,24.64,14.72,57.09,10.87,19.05
Arabidopsis thaliana homolog: AT5G10160.1
Automatic updates:
Name: BT096533 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-15J13 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253001 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase-like (LOC100790839), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:1190436..1192530 (- strand)
Length: 2095
Type: three_prime_UTR
Position: Chr05:1192531..1192782 (- strand)
Length: 252
Type: CDS
Position: Chr05:1195277..1195421 (- strand)
Length: 145
Type: CDS
Position: Chr05:1195505..1195565 (- strand)
Length: 61
Type: CDS
Position: Chr05:1195645..1195843 (- strand)
Length: 199
Type: CDS
Position: Chr05:1195844..1196017 (- strand)
Length: 174
Type: five_prime_UTR


>Vigan.05G018300.01
ATTACCTTTT GCTACTCGCA CTTTCCACCA TTTAATTTCA TTGTTCTTGT CGCCATTCTT TGCTTTTAAC GTCCACCTGG
AATTGCTATT GCATTCACAT TCAATAACTC ACTCAGTGCC TCACTCTTCA ATTGCAAGCT TTGGTGTGAC TCTTCACTTC
ACATTTGAAA GCAAATGGCA GCGTCTGCTT TCTCCAACGC ATTGCTTTCT CCCGTGACAC TTCCTTCCAA ACCCAAATCT
ATTTCCTTTC AACCCAGATT CCCACTTCTC AAATTCCCCA GCACCAGATC CCACCCCTCG TTGAGCAAAA CGACCACGTT
TTGTTCCTCG GATGCCGCCG ATGCTCCTCA ACATGACACC CCAATTGAAT TAAGGTATCC GGCATTTCCA ACAGTCATGG
ATATCAACCA GATTCGTGAC ATTTTGCCCC ACAGGTTTCC TTTCCTTCTG GTGGATAGAG TAATTGAGTA CAATCCTGGC
GTTTCTGCTG TCGCCATAAA GAATGTGACA ATAAATGACA ATTTCTTTCC TGGACATTTT CCAGAAAGGC CCATCATGCC
GGGTGTTCTC ATGATTGAGG CAATGGCACA AGTTGGCGGT TTGGTCATGT TGCAACCTGA AGTGGGAGGT TCTCGTGAAA
ACTTCTTCTT TGCTGGAATA GACAAAGTGC GATTTCGTAA GCCAGTGATT GCAGGGGACA CCTTAGTTAT GAGAATGACG
CTTACTAAGC TGCAAAAGCG ATTTGGAATA GCAAAGATGG AAGGGAAGGC ATATGTTGGA GGTGAAGTTG TGTGTGAGGG
TGAATTTTTG ATGGCGATGG GGAGTGGATA AGTAGACACA TTCCTTTCGA CTGGAATAGA GTTCATATTC TTCCATCTTT
AAATTTAATT GCTTCTGCTT TTGAATGCAG AACGTTGTGA ACATTTAGAT TAATGTATGC ATTTTCAACG AAATCTATCT
GAACCTTCTG TTCTAGTTCT CCATATGACT TTGCTTTGGT TGTTTTGTTA TTTAATACAA GTTTATCTTT TAGACGGATG
AGCTCAATGG CATTTGACCT TGTGTTCTCT CATCCAAATT TGTTTTCATT CAGAGTACTT GTTTATGGCA ATCCAATATT
GTATACATTT TTTACCCAAT TGTGCATAAA AAAGATACTT GAAACTCCAT ACGACTAGGC TACACAATCA GGCACTAGCA
ATATTTTCAA ATCAGCCTTA TGACTTCAAC TACTCCTGGC TTGAGAATGA AAAGTAAATG CAAGTATTTA TACGGTGGCT
ACATTAGAGT ACTACTGATA TAAAGTGAAC GCATCCATAT TAGAGCATAG AATTTGAATT TGTCATGGGG TAACACAAAC
AGGACAAAGG TTCATTTGCA ACTCCAGCCT CTCAATTCAA TTATCTACAT GAATTGTGTA GTTTACAAGC CAAGTGCGCC
TAGGGGGGTC TTTCCTTGTC CAGCCTCAAA GTAGAAAATC AGCATGGCCA ACATAGCAAT CCTGGCATGC TTAATCTCAG
CTAATTTCAA TCTTTCCAGC TTCTCTGTAT CCGGGATGTA AACTCCATCC TTGAGAGTGC CAGCGAAGCC CAAAGGGTCA
AAGAATTTGC CTCCTGGGTA CCCTTGTTCA CCAGTAGCAT TGGCAAAGTT CTCAGCAGTT TTTGACCATG GAGTGGCCCA
TTCCACTGAC TGTGAGTCTG GGTTGAAGAA ATCCACCCAT CTCTTGCTCT CAACCCATCC CATAAGAATC AATTGGGTTC
CCAAAAGAGA ACCAAAGGAA AAAGGAGCAA TTGCATTGGG GTCAGCTCCA GCCTCAAACC ATGGCACTCC ACTCCAGGCC
TGCCCTACAA AGATACCTAA AACTGCAGCC ATTGCCCACC TCCCATGAAT CAGCTCAGCT TCTCTGTACC ATTTCAGGAA
TGCCGGGTCC TTCCCCAGGC CTAGTGGGTC AAAACCAAAG TCACCTGGTA GCCTGCACTT GAAACATTAT AAATCAATTT
CCAAAGAGAA ATTTGGAGGA AAAAGTGAAG AGAGAAAATG GGAAAATTTG TTTTCAGAAT TCAAAATATG CAACTTCACC
AAGTTCATGC CCCACCACAT TCAACATCGT TCCAGATTAC TCACCTTAAG CTAGGACATC ATACAACACC ATTTCATGGT
TTCTAAAACA CTTTAATTTA GAAACATGTT TTTCAGAAAA TGAAAAAAAA TATATTTCTG AATAGCCATG GAATTATGTC
AGAAAACACA TTTTGAAATA AAAAAGTATG AAGGAATTTG GGTGGACTCA CGATCCATCA AGCCATTCTG GGTCGACGAG
ATTGCCACCA GCTCTAACAC CAGGGAGCCA TGACTTCTTT GGTGCTGCTG CAGCTACCAC AATGAGTCTT CTAGGACTAA
CTGCAACACC GACTTTGCCT CCAATGGAAG TGGCCAGAAG GGTTTGGCTC CTGCTTCCTC CACTCAAGAA GGAAGATCCC
AACCCATTTA ACACAGCACC AGATGTTGCA GCTGCCATCA CTCTATAAAG TTCTCTGGAG ACGGTGAGAA AATAGAGGCT
GCTTTTGAGG TTTACTTGTA AAATGCAGCA CTCAGGGAGA TTTTATGTGT GTGTGGATGT GAAGTGTGAG AGAATCTAAG
GAGTTGTCAT AGCAGGCCAG GTAGGATGGT GAAATCTGTA GAAGAAATCT TATGGAACAA CGGATAGATT TCGGACCAAT
AGGAACTAGA TGTCCATCCT CATCCCAAGT TGCTTCCAGC CACGTGGACA ACTCAACAAC CTATTCCCTC CACTTAAGTT
GTTCTTGTAA TAGAATCACG TCCCAACAAA ACCATTTTAA TGAAGCAATA TGTGGATCAC TACAAACCTA CTTCTTCACC
TCACAAAAAC CATGGCATAT TCGTTATTTC AACTGCTACT TATCTA

>Vigan.05G018300.01
ATGGCAGCGT CTGCTTTCTC CAACGCATTG CTTTCTCCCG TGACACTTCC TTCCAAACCC AAATCTATTT CCTTTCAACC
CAGATTCCCA CTTCTCAAAT TCCCCAGCAC CAGATCCCAC CCCTCGTTGA GCAAAACGAC CACGTTTTGT TCCTCGGATG
CCGCCGATGC TCCTCAACAT GACACCCCAA TTGAATTAAG GTATCCGGCA TTTCCAACAG TCATGGATAT CAACCAGATT
CGTGACATTT TGCCCCACAG GTTTCCTTTC CTTCTGGTGG ATAGAGTAAT TGAGTACAAT CCTGGCGTTT CTGCTGTCGC
CATAAAGAAT GTGACAATAA ATGACAATTT CTTTCCTGGA CATTTTCCAG AAAGGCCCAT CATGCCGGGT GTTCTCATGA
TTGAGGCAAT GGCACAAGTT GGCGGTTTGG TCATGTTGCA ACCTGAAGTG GGAGGTTCTC GTGAAAACTT CTTCTTTGCT
GGAATAGACA AAGTGCGATT TCGTAAGCCA GTGATTGCAG GGGACACCTT AGTTATGAGA ATGACGCTTA CTAAGCTGCA
AAAGCGATTT GGAATAGCAA AGATGGAAGG GAAGGCATAT GTTGGAGGTG AAGTTGTGTG TGAGGGTGAA TTTTTGATGG
CGATGGGGAG TGGATAA

>Vigan.05G018300.01
MAASAFSNAL LSPVTLPSKP KSISFQPRFP LLKFPSTRSH PSLSKTTTFC SSDAADAPQH DTPIELRYPA FPTVMDINQI
RDILPHRFPF LLVDRVIEYN PGVSAVAIKN VTINDNFFPG HFPERPIMPG VLMIEAMAQV GGLVMLQPEV GGSRENFFFA
GIDKVRFRKP VIAGDTLVMR MTLTKLQKRF GIAKMEGKAY VGGEVVCEGE FLMAMGSG*