GBrowse Details

Vigan.05G018400.01

Basic Information:
Name: Vigan.05G018400.01
Multiple alignment
Variant Information
Position: Chr05:1190436..1193340 (+ strand)
Length: 2905
Functional Information:
Description: Similar to Chlorophyll a/b-binding protein CP24. [Q9XQB6, Vigna radiata var. radiata]
GO: Biological Process: photosynthesis, light harvesting (GO:0009765)
Cellular Component: membrane (GO:0016020)
InterPro: Chlorophyll A-B binding protein, plant (IPR001344)
Chlorophyll A-B binding protein (IPR022796)
Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.59,0.74,81.98,777.46,0.09,169.83,2.59,123.91
Arabidopsis thaliana homolog: AT1G15820.1
Automatic updates:
Name: BT090947 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-18J10 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249486 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max light harvesting complex photosystem II subunit (LOC100527463), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001317323 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata chlorophyll a-b binding protein CP24 10A, chloroplastic (LOC106775787), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354776 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max light harvesting complex photosystem II subunit 6 (LOC100500118), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:1190436..1190843 (+ strand)
Length: 408
Type: five_prime_UTR
Position: Chr05:1190844..1191070 (+ strand)
Length: 227
Type: CDS
Position: Chr05:1191390..1191939 (+ strand)
Length: 550
Type: CDS
Position: Chr05:1191940..1193340 (+ strand)
Length: 1401
Type: three_prime_UTR


>Vigan.05G018400.01
TAGATAAGTA GCAGTTGAAA TAACGAATAT GCCATGGTTT TTGTGAGGTG AAGAAGTAGG TTTGTAGTGA TCCACATATT
GCTTCATTAA AATGGTTTTG TTGGGACGTG ATTCTATTAC AAGAACAACT TAAGTGGAGG GAATAGGTTG TTGAGTTGTC
CACGTGGCTG GAAGCAACTT GGGATGAGGA TGGACATCTA GTTCCTATTG GTCCGAAATC TATCCGTTGT TCCATAAGAT
TTCTTCTACA GATTTCACCA TCCTACCTGG CCTGCTATGA CAACTCCTTA GATTCTCTCA CACTTCACAT CCACACACAC
ATAAAATCTC CCTGAGTGCT GCATTTTACA AGTAAACCTC AAAAGCAGCC TCTATTTTCT CACCGTCTCC AGAGAACTTT
ATAGAGTGAT GGCAGCTGCA ACATCTGGTG CTGTGTTAAA TGGGTTGGGA TCTTCCTTCT TGAGTGGAGG AAGCAGGAGC
CAAACCCTTC TGGCCACTTC CATTGGAGGC AAAGTCGGTG TTGCAGTTAG TCCTAGAAGA CTCATTGTGG TAGCTGCAGC
AGCACCAAAG AAGTCATGGC TCCCTGGTGT TAGAGCTGGT GGCAATCTCG TCGACCCAGA ATGGCTTGAT GGATCGCTAC
CAGGTGACTT TGGTTTTGAC CCACTAGGCC TGGGGAAGGA CCCGGCATTC CTGAAATGGT ACAGAGAAGC TGAGCTGATT
CATGGGAGGT GGGCAATGGC TGCAGTTTTA GGTATCTTTG TAGGGCAGGC CTGGAGTGGA GTGCCATGGT TTGAGGCTGG
AGCTGACCCC AATGCAATTG CTCCTTTTTC CTTTGGTTCT CTTTTGGGAA CCCAATTGAT TCTTATGGGA TGGGTTGAGA
GCAAGAGATG GGTGGATTTC TTCAACCCAG ACTCACAGTC AGTGGAATGG GCCACTCCAT GGTCAAAAAC TGCTGAGAAC
TTTGCCAATG CTACTGGTGA ACAAGGGTAC CCAGGAGGCA AATTCTTTGA CCCTTTGGGC TTCGCTGGCA CTCTCAAGGA
TGGAGTTTAC ATCCCGGATA CAGAGAAGCT GGAAAGATTG AAATTAGCTG AGATTAAGCA TGCCAGGATT GCTATGTTGG
CCATGCTGAT TTTCTACTTT GAGGCTGGAC AAGGAAAGAC CCCCCTAGGC GCACTTGGCT TGTAAACTAC ACAATTCATG
TAGATAATTG AATTGAGAGG CTGGAGTTGC AAATGAACCT TTGTCCTGTT TGTGTTACCC CATGACAAAT TCAAATTCTA
TGCTCTAATA TGGATGCGTT CACTTTATAT CAGTAGTACT CTAATGTAGC CACCGTATAA ATACTTGCAT TTACTTTTCA
TTCTCAAGCC AGGAGTAGTT GAAGTCATAA GGCTGATTTG AAAATATTGC TAGTGCCTGA TTGTGTAGCC TAGTCGTATG
GAGTTTCAAG TATCTTTTTT ATGCACAATT GGGTAAAAAA TGTATACAAT ATTGGATTGC CATAAACAAG TACTCTGAAT
GAAAACAAAT TTGGATGAGA GAACACAAGG TCAAATGCCA TTGAGCTCAT CCGTCTAAAA GATAAACTTG TATTAAATAA
CAAAACAACC AAAGCAAAGT CATATGGAGA ACTAGAACAG AAGGTTCAGA TAGATTTCGT TGAAAATGCA TACATTAATC
TAAATGTTCA CAACGTTCTG CATTCAAAAG CAGAAGCAAT TAAATTTAAA GATGGAAGAA TATGAACTCT ATTCCAGTCG
AAAGGAATGT GTCTACTTAT CCACTCCCCA TCGCCATCAA AAATTCACCC TCACACACAA CTTCACCTCC AACATATGCC
TTCCCTTCCA TCTTTGCTAT TCCAAATCGC TTTTGCAGCT TAGTAAGCGT CATTCTCATA ACTAAGGTGT CCCCTGCAAT
CACTGGCTTA CGAAATCGCA CTTTGTCTAT TCCAGCAAAG AAGAAGTTTT CACGAGAACC TCCCACTTCA GGTTGCAACA
TGACCAAACC GCCAACTTGT GCCATTGCCT GCAACAAAAG ACCTCATGTT CATGCCCACT TTTAAAGCAG ATTAACAGAA
ATCAAATAAA TTTTTCCCTC TTTTCTTTAC ATTCTTACAT TGGAGTTGAG ATAGTTTGTA GTGAAATAGA GCTATTACAG
AGTCTTTTTG CGTGCAGTTC TAAAGCTTAC AACTAACTTA GAAACTTAAA GAGGATGGTT GTTCATCTCA ACAAAAGAAG
TGCTACAGAA GTTGGAGCCT AGGAATTATA GTTCACTGAA TATAAATGAG CTTAACAATG TAACAAGTGA TCGTAGTCTG
ATGTATGTCG GTCTAATCAA GATAACGATA TAAAACCAGT TTCAGAGACT GCATATAAAA TGGTAAAAGG GAAACAAATT
TTGACAATAC GGTAGACAAC AAGGGACAAT GTTTCGTTGG AGCATAAAGC ACTCAACCCA GAAAAATGCA TGCATGCTAC
ACGGTTAAAT TTATTTTCTG ACCATGGACA AAAGATGTCA TAAGTGAGAC ATGAAACTTG AAAGAGAAAG AAAGGAAGAA
AGAAAGAATG AAAGAGCATT GGTTTT

>Vigan.05G018400.01
ATGGCAGCTG CAACATCTGG TGCTGTGTTA AATGGGTTGG GATCTTCCTT CTTGAGTGGA GGAAGCAGGA GCCAAACCCT
TCTGGCCACT TCCATTGGAG GCAAAGTCGG TGTTGCAGTT AGTCCTAGAA GACTCATTGT GGTAGCTGCA GCAGCACCAA
AGAAGTCATG GCTCCCTGGT GTTAGAGCTG GTGGCAATCT CGTCGACCCA GAATGGCTTG ATGGATCGCT ACCAGGTGAC
TTTGGTTTTG ACCCACTAGG CCTGGGGAAG GACCCGGCAT TCCTGAAATG GTACAGAGAA GCTGAGCTGA TTCATGGGAG
GTGGGCAATG GCTGCAGTTT TAGGTATCTT TGTAGGGCAG GCCTGGAGTG GAGTGCCATG GTTTGAGGCT GGAGCTGACC
CCAATGCAAT TGCTCCTTTT TCCTTTGGTT CTCTTTTGGG AACCCAATTG ATTCTTATGG GATGGGTTGA GAGCAAGAGA
TGGGTGGATT TCTTCAACCC AGACTCACAG TCAGTGGAAT GGGCCACTCC ATGGTCAAAA ACTGCTGAGA ACTTTGCCAA
TGCTACTGGT GAACAAGGGT ACCCAGGAGG CAAATTCTTT GACCCTTTGG GCTTCGCTGG CACTCTCAAG GATGGAGTTT
ACATCCCGGA TACAGAGAAG CTGGAAAGAT TGAAATTAGC TGAGATTAAG CATGCCAGGA TTGCTATGTT GGCCATGCTG
ATTTTCTACT TTGAGGCTGG ACAAGGAAAG ACCCCCCTAG GCGCACTTGG CTTGTAA

>Vigan.05G018400.01
MAAATSGAVL NGLGSSFLSG GSRSQTLLAT SIGGKVGVAV SPRRLIVVAA AAPKKSWLPG VRAGGNLVDP EWLDGSLPGD
FGFDPLGLGK DPAFLKWYRE AELIHGRWAM AAVLGIFVGQ AWSGVPWFEA GADPNAIAPF SFGSLLGTQL ILMGWVESKR
WVDFFNPDSQ SVEWATPWSK TAENFANATG EQGYPGGKFF DPLGFAGTLK DGVYIPDTEK LERLKLAEIK HARIAMLAML
IFYFEAGQGK TPLGALGL*