GBrowse Details

Vigan.05G021600.01

Basic Information:
Name: Vigan.05G021600.01
Multiple alignment
Variant Information
Position: Chr05:1377924..1382217 (+ strand)
Length: 4294
Functional Information:
Description: Similar to tRNA (Cytosine-5-)-methyltransferase. [G7IPK4, Medicago truncatula]
GO: Biological Process: DNA methylation (GO:0006306)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: methyltransferase activity (GO:0008168)
InterPro: C-5 cytosine methyltransferase (IPR001525)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.92,7.89,4.43,5.12,10.56,2.66,6.23,3.51
Arabidopsis thaliana homolog: AT5G25480.1
Automatic updates:
Name: NM_001255937 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tRNA (cytosine-5-)-methyltransferase-like (LOC100792567), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:1377924..1378030 (+ strand)
Length: 107
Type: five_prime_UTR
Position: Chr05:1378031..1378102 (+ strand)
Length: 72
Type: CDS
Position: Chr05:1378176..1378286 (+ strand)
Length: 111
Type: CDS
Position: Chr05:1378745..1378838 (+ strand)
Length: 94
Type: CDS
Position: Chr05:1378921..1379039 (+ strand)
Length: 119
Type: CDS
Position: Chr05:1379143..1379265 (+ strand)
Length: 123
Type: CDS
Position: Chr05:1380249..1380588 (+ strand)
Length: 340
Type: CDS
Position: Chr05:1380685..1380779 (+ strand)
Length: 95
Type: CDS
Position: Chr05:1381334..1381396 (+ strand)
Length: 63
Type: CDS
Position: Chr05:1381560..1381624 (+ strand)
Length: 65
Type: CDS
Position: Chr05:1381815..1381890 (+ strand)
Length: 76
Type: CDS
Position: Chr05:1381891..1382217 (+ strand)
Length: 327
Type: three_prime_UTR


>Vigan.05G021600.01
CTAGGGTATT GGTCATTGAT TGGCAGGAGG CAACTAGGGA TTTTTGTTAT ATCATACGAA TTTTTGTTTG GTAAAAAGCG
ATTGGTAGAT TAGAGGCAGT AATCGGAATG GCGAAGGGGT CGTCCGAGGC ACATGGTTGC CGGAGAGTGT TGGAGTTTTA
CAGTGGAATC GGTGGCATGA GGTACTCTCT GATGAAGGCC CAGGTGAATG CCGAAGTGGT GGAAGCATTT GAAATTAACG
ACACAGCAAA CGACGTTTAC CAACATAATT TTGCTCATCG TCCTTTTCAG GGAAATATTC AATGCCTGAC TTCTGCTGAT
CTGGACAAGT ATGGTGCCGA TGCATGGCTT CTTTCTCCTC CTTGCCAACC TTATACACGA CAAGGCCTTC AGAAGGACAC
TGGAGATGCC CGATCATTTT CTTTTCTTCA GATTCTTGAG CTCTTGCCAT TTCTATTGAA GCCTCCAAGT ATGTTATTTG
TAGAAAATGT TGTTGGATTT GAGACTTCTG ATACACATGC AAAACTGGTC GACATATTGG AAAAGACAGA TTTTATCACA
CAGGAGTTCA TTCTGACCCC TTTACAGTTT GGAATCCCAT ATTCCAGGCC TCGTTATTTT TGTCTGGCTA AGAGGAAAAC
TTCATCTTTT GTAAATGAAT GTTTAAACCG CCAGCTGATT CAGTCTCCGG GGCCATTATT TGAGTACTTT GATACAGTGA
CTGATGATGA AGATGATTTG TCAAAAGAGG ACAGACATAA ATTGTTGCAG TTATGTCAAC CTATTGAGAA ATTTCTTGAA
TTGAAGAAAG CTGACAATGA TATACCTGTT GAAGCAGCTA CTTTAATGTC TGGTTTGTCT AATGATGTTC CTGAGACTTC
GGGAAAAACT AATGGTCATG AATATGAATC TTTGGACCAA TATTATGTTC ACCCAAGCTT GATAGAACGG TGGGGAAGTG
CTATGGATGT TGTCTATCCT GATTCAAAGC GCTGCTGCTG TTTCACAAAA AGTTATTACA GATACGTGAA GGGAACTGGA
TCCCTTTTGG CAACTGTCCA GCCGATGAAG AGGGACAAAA GTTCACTGAA GGAGCAGTGT CTCAGATATT TTACCCCGAG
AGAGGTTGCC AACCTACACT CTTTTCCTGG AGAATTTGAG TTTCCAGAGC ACGTTAGTCT CAAGCAAAGG TATGCCTTGT
TAGGGAACAG TTTAAGCATA GCAGTTGTTG CTCCCTTACT TAAGTATCTT TTCACCGAAC CTTAATGATT TTTGATCGCG
ACATCCGTTC AACAGAAGCA GATAGATATT TCATAGGGCC GTCTCCTATA ATTTTGCTAT GATAATGAGA TCATGTATCA
TAATGCTGTG AGTTCGTGTG TCGATCATAA CGATCCAACA CTCACGAGTT TGCCACTTCA GAATTCAAAT TTAGTTTACT
AATGAGGGAC TCTAAAATGT AAATGAAATA TGGGAGAGAT TTAAAATGTA CTTATCCGGC ATCTTGTAGA AGAAATGATA
GCATCTTGTA TCAAATTTGC ATTTAAACAG ATTTGAGGAA ATATGCAGTT AAATTTAAGT GTTCTCTAAA GC

>Vigan.05G021600.01
ATGGCGAAGG GGTCGTCCGA GGCACATGGT TGCCGGAGAG TGTTGGAGTT TTACAGTGGA ATCGGTGGCA TGAGGTACTC
TCTGATGAAG GCCCAGGTGA ATGCCGAAGT GGTGGAAGCA TTTGAAATTA ACGACACAGC AAACGACGTT TACCAACATA
ATTTTGCTCA TCGTCCTTTT CAGGGAAATA TTCAATGCCT GACTTCTGCT GATCTGGACA AGTATGGTGC CGATGCATGG
CTTCTTTCTC CTCCTTGCCA ACCTTATACA CGACAAGGCC TTCAGAAGGA CACTGGAGAT GCCCGATCAT TTTCTTTTCT
TCAGATTCTT GAGCTCTTGC CATTTCTATT GAAGCCTCCA AGTATGTTAT TTGTAGAAAA TGTTGTTGGA TTTGAGACTT
CTGATACACA TGCAAAACTG GTCGACATAT TGGAAAAGAC AGATTTTATC ACACAGGAGT TCATTCTGAC CCCTTTACAG
TTTGGAATCC CATATTCCAG GCCTCGTTAT TTTTGTCTGG CTAAGAGGAA AACTTCATCT TTTGTAAATG AATGTTTAAA
CCGCCAGCTG ATTCAGTCTC CGGGGCCATT ATTTGAGTAC TTTGATACAG TGACTGATGA TGAAGATGAT TTGTCAAAAG
AGGACAGACA TAAATTGTTG CAGTTATGTC AACCTATTGA GAAATTTCTT GAATTGAAGA AAGCTGACAA TGATATACCT
GTTGAAGCAG CTACTTTAAT GTCTGGTTTG TCTAATGATG TTCCTGAGAC TTCGGGAAAA ACTAATGGTC ATGAATATGA
ATCTTTGGAC CAATATTATG TTCACCCAAG CTTGATAGAA CGGTGGGGAA GTGCTATGGA TGTTGTCTAT CCTGATTCAA
AGCGCTGCTG CTGTTTCACA AAAAGTTATT ACAGATACGT GAAGGGAACT GGATCCCTTT TGGCAACTGT CCAGCCGATG
AAGAGGGACA AAAGTTCACT GAAGGAGCAG TGTCTCAGAT ATTTTACCCC GAGAGAGGTT GCCAACCTAC ACTCTTTTCC
TGGAGAATTT GAGTTTCCAG AGCACGTTAG TCTCAAGCAA AGGTATGCCT TGTTAGGGAA CAGTTTAAGC ATAGCAGTTG
TTGCTCCCTT ACTTAAGTAT CTTTTCACCG AACCTTAA

>Vigan.05G021600.01
MAKGSSEAHG CRRVLEFYSG IGGMRYSLMK AQVNAEVVEA FEINDTANDV YQHNFAHRPF QGNIQCLTSA DLDKYGADAW
LLSPPCQPYT RQGLQKDTGD ARSFSFLQIL ELLPFLLKPP SMLFVENVVG FETSDTHAKL VDILEKTDFI TQEFILTPLQ
FGIPYSRPRY FCLAKRKTSS FVNECLNRQL IQSPGPLFEY FDTVTDDEDD LSKEDRHKLL QLCQPIEKFL ELKKADNDIP
VEAATLMSGL SNDVPETSGK TNGHEYESLD QYYVHPSLIE RWGSAMDVVY PDSKRCCCFT KSYYRYVKGT GSLLATVQPM
KRDKSSLKEQ CLRYFTPREV ANLHSFPGEF EFPEHVSLKQ RYALLGNSLS IAVVAPLLKY LFTEP*