GBrowse Details

Vigan.05G022800.01

Basic Information:
Name: Vigan.05G022800.01
Multiple alignment
Variant Information
Position: Chr05:1439980..1444199 (+ strand)
Length: 4220
Functional Information:
Description: Similar to Uncharacterized protein. [G7IPM1, Medicago truncatula]
InterPro: Ubiquinol-cytochrome c chaperone, CBP3 (IPR007129)
Ubiquinol-cytochrome c chaperone/UPF0174 (IPR021150)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.98,9.01,8.01,10.44,15.44,9.31,47.90,8.73
Arabidopsis thaliana homolog: AT5G51220.1
Structure :
Position: Chr05:1439980..1440138 (+ strand)
Length: 159
Type: five_prime_UTR
Position: Chr05:1440139..1440285 (+ strand)
Length: 147
Type: CDS
Position: Chr05:1440399..1440612 (+ strand)
Length: 214
Type: CDS
Position: Chr05:1441584..1441750 (+ strand)
Length: 167
Type: CDS
Position: Chr05:1441968..1442092 (+ strand)
Length: 125
Type: CDS
Position: Chr05:1442265..1442325 (+ strand)
Length: 61
Type: CDS
Position: Chr05:1442922..1442970 (+ strand)
Length: 49
Type: CDS
Position: Chr05:1443737..1443816 (+ strand)
Length: 80
Type: CDS
Position: Chr05:1443817..1444199 (+ strand)
Length: 383
Type: three_prime_UTR


>Vigan.05G022800.01
CTGATTTTGG TCTGTGTCCA GAGGTTTCAA ATTTAATCCT TTTCTATTTA TTTATTTTCA GTCGTTCTTC TTTCTCTTGC
GTTGCGTATC AATGTGTTGT TATCTGGGTT GTCCTGCATA ACACAATCTA TTAAGCTTTG ATTTCGATTC ATAACCAGAA
TGTTACGAAG GTGGAGCAAA GTAGTTTCTC CAATCTCCAA ATTTGGATCG CAGAGCCATC TTAATTTCGT CAAGAATGTC
ACGCGCCAAA GCTACGCTGG GGTTGCACCC GCGCCCACGA TAGAGGACAA ACCTCAATCC CCTGCGGTTA ACCCACACAA
AATGTTTTGG TCTAAACCCT GTTCTCTGGC CCTGCCCCCT GACTCATCCC TCAGAGTTGA AGAACCTAAT TATCAGGGCA
TCAAGCGTTT CTTGCTCAAA CTCATGATGT TTTATAGTAA GCAGAGCAGG TCAATTCGAG GGGCTAATGT TGTGTACCAT
AGAATCATTT CACAAGTTGA TAAACCTCCC ATTTATGAAG TTTTTAACTT GGAGAAAACT TTCAAAACAA CGTTCTCTTT
ACTTGTACTT CATATGTGGT TATGTTTGCG TCGCTTGAAG CAAGAGGGAA ATGAGGGTGT TGAATTTGGG CAATACCTTT
ATGAGATTTA CAATCATGAT GTGGAGCTAA GAGTGTCCAA AGCTGGAGTT AACCTACTAC TGACTAAGTG GATGAAAGAG
CTCGAGAAGA TATTTTATGG GAACATTGTT GCCTATGATA CTGCAATACT TCCAGAAGCT AAACCGGGTG ATTTCTCCAA
TGTTATATGG AGGAATATAT TCTCTGAAGA TGGGTCTTCA ACAGAAGACG ATGCTGCATC TCAATCAGTG CAGGCGCTCG
CCAGGTATGC TCGCCGGGAA GAAAGTTGCA TGACTTTAAC AGATAAAGAA GCACTATTTT CAGGGAATTT CATGTTCACC
TCATTGAAAC ATGAGAACGG AAGAGGAAAG AGGCCTCAAT GATTAGTGAC GATTTCTAAA TTGTGATTGG GTGATTGAAA
ATACACGCTG TTATTTTTTT ACCTTTCTTA ACAAAAAGTG TTGAATAATT ATGACAAAAG GCTTGTGTCC TTCTCCGTAA
GTCTTTATAC CTGATTAGCT TGGTGTCTAG ATACTAGATT TTTTTCATAT TCTTTGCTCT GTAAAACAAG AAAAGAAAGA
GGTGGGCGTG ATTAAAAAGT GTCACTCTTT CTTTTTAAGG TCCTCTGTTC TTTACAGCGT CTTAGCTGCT ATTAACCAGT
TGCCTTCGAA ACTGAGTTTA TATGACAGTA ATTAATGATA TCTATAATTT CTGTTTGTGA TAAGCTCATG AAAATGTTCT
CAAGCAATTT GCCATTTATC ACAAA

>Vigan.05G022800.01
ATGTTACGAA GGTGGAGCAA AGTAGTTTCT CCAATCTCCA AATTTGGATC GCAGAGCCAT CTTAATTTCG TCAAGAATGT
CACGCGCCAA AGCTACGCTG GGGTTGCACC CGCGCCCACG ATAGAGGACA AACCTCAATC CCCTGCGGTT AACCCACACA
AAATGTTTTG GTCTAAACCC TGTTCTCTGG CCCTGCCCCC TGACTCATCC CTCAGAGTTG AAGAACCTAA TTATCAGGGC
ATCAAGCGTT TCTTGCTCAA ACTCATGATG TTTTATAGTA AGCAGAGCAG GTCAATTCGA GGGGCTAATG TTGTGTACCA
TAGAATCATT TCACAAGTTG ATAAACCTCC CATTTATGAA GTTTTTAACT TGGAGAAAAC TTTCAAAACA ACGTTCTCTT
TACTTGTACT TCATATGTGG TTATGTTTGC GTCGCTTGAA GCAAGAGGGA AATGAGGGTG TTGAATTTGG GCAATACCTT
TATGAGATTT ACAATCATGA TGTGGAGCTA AGAGTGTCCA AAGCTGGAGT TAACCTACTA CTGACTAAGT GGATGAAAGA
GCTCGAGAAG ATATTTTATG GGAACATTGT TGCCTATGAT ACTGCAATAC TTCCAGAAGC TAAACCGGGT GATTTCTCCA
ATGTTATATG GAGGAATATA TTCTCTGAAG ATGGGTCTTC AACAGAAGAC GATGCTGCAT CTCAATCAGT GCAGGCGCTC
GCCAGGTATG CTCGCCGGGA AGAAAGTTGC ATGACTTTAA CAGATAAAGA AGCACTATTT TCAGGGAATT TCATGTTCAC
CTCATTGAAA CATGAGAACG GAAGAGGAAA GAGGCCTCAA TGA

>Vigan.05G022800.01
MLRRWSKVVS PISKFGSQSH LNFVKNVTRQ SYAGVAPAPT IEDKPQSPAV NPHKMFWSKP CSLALPPDSS LRVEEPNYQG
IKRFLLKLMM FYSKQSRSIR GANVVYHRII SQVDKPPIYE VFNLEKTFKT TFSLLVLHMW LCLRRLKQEG NEGVEFGQYL
YEIYNHDVEL RVSKAGVNLL LTKWMKELEK IFYGNIVAYD TAILPEAKPG DFSNVIWRNI FSEDGSSTED DAASQSVQAL
ARYARREESC MTLTDKEALF SGNFMFTSLK HENGRGKRPQ *