GBrowse Details

Vigan.05G028000.01

Basic Information:
Name: Vigan.05G028000.01
Multiple alignment
Variant Information
Position: Chr05:1818451..1821771 (- strand)
Length: 3321
Functional Information:
Description: Similar to Uncharacterized protein. [I1M2J1, Glycine max]
GO: Biological Process: phosphate-containing compound metabolic process (GO:0006796)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: magnesium ion binding (GO:0000287)
Molecular Function: inorganic diphosphatase activity (GO:0004427)
InterPro: Inorganic pyrophosphatase (IPR008162)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.86,45.29,44.32,165.47,124.58,61.06,22.27,43.48
Arabidopsis thaliana homolog: AT5G09650.1
Automatic updates:
Name: NM_001255616 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max soluble inorganic pyrophosphatase 1, chloroplastic-like (LOC100787109), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:1818451..1818872 (- strand)
Length: 422
Type: three_prime_UTR
Position: Chr05:1818873..1818965 (- strand)
Length: 93
Type: CDS
Position: Chr05:1819314..1819412 (- strand)
Length: 99
Type: CDS
Position: Chr05:1819739..1819920 (- strand)
Length: 182
Type: CDS
Position: Chr05:1820016..1820116 (- strand)
Length: 101
Type: CDS
Position: Chr05:1820508..1820668 (- strand)
Length: 161
Type: CDS
Position: Chr05:1821372..1821602 (- strand)
Length: 231
Type: CDS
Position: Chr05:1821603..1821771 (- strand)
Length: 169
Type: five_prime_UTR


>Vigan.05G028000.01
CTCACGTGCG CTTAAAGCCA ATGGCCAAAT TTGAACCAGA AAAAAAAATT ATAATAATAA AAACCCAACT CACTCAACAC
TACAGAGACA CTGCCACAAA GGGCAAAGAG GCCTATCAGC AAACAAAGTT TGTGCTTTTA GAGTGTGTGA AGAAGGAAGA
GCATAATCCA TGGCGGCTAC TAGAGCAATA ACCATAGCGA GCAATTCCAC ATGCACTCTC CTTAGAAAGA AACCCTTTGT
GGGTGGCACT GCCCTTTCCC TCAACAACCT CAAATTTGGT CGGACTAGGA GGTCTTATAC CTGCAGGGCC ATCTACAATC
CCCAGATTGT CGTCAAGGAA GAAGGCCAGC CCGAAACCCT CGACTATAGA GTTTTCTTTG TTGACCAATC TGGCAAGAAG
GTTTCTCCCT GGCATGATAT TCCATTGCGA TCGGGTGATG ATATCTTCAA CTTCATTGTT GAGATTCCTA AAGAATCCAG
TGCAAAGATG GAGGTTGCAA CTGATGAGGC TTTCACTCCC ATAAAACAAG ATACAAAAAA GGGAAAGCTC CGATATTATC
CCTACAATAT ACATTGGAAC TATGGCTTAC TTCCACAAAC ATGGGAAGAT CCATCTTTTG CAAACTCTGA AGTTGAAGGA
GCACTGGGAG ATAACGATCC AGTTGATGTT GTTGAGATTG GTGAAAGACA GGGGAAAATA GGTGAGGTTC TGAAGGTCAA
ACCCTTGGGT GCATTAGCCA TGATTGATGA AGGAGAACTT GATTGGAAAA TAGTTGCAAT CTCATTAGAT GATCCAAGGG
CGTCATTGGT GAATGATGTT AATGACGTTG AGAAGCATTT TCCTGGAACT CTAACTGCAA TTAGGGACTG GTTCAGAGAC
TACAAGATAC CTGATGGAAA GCCTGCTAAT AAATTTGGGC TCGGCAACCA GGCAGCTAAT AAGGAATACG CGCTTAAGGT
TATCACAGAG ACCAACGAGT CCTGGAATAA ACTTATTAAG AGATCAATTC CTGCAGGAGA GTTGTCTCTT GCGTAGAGAT
TTTGGGAGGG TCTGTGTTCA TGCCATTGCT TGCATTTTGT ACAATTCTAT TTATGAAGTA GCAATCTCTT CTGTTTAGCT
TACCGGTTAT ATCTTCGACT CTGTTCAGTT GGTCAGGCGT TAGTTCAATA AATCCATCTT GCTTGTGTAT TCTACATTTT
ATTGTCTTTC TTTTTCATCA TTCTTTATAA CGAGGCAACT CCATCTGATT CTCGAATTGG AGTGGAAATA GACTGATAGT
TTAATTCTTC CAGAATTCAA ACGGCAATAA TTTTTTTTTT GCCATCTTTG GTTTTGGGGG ATAAAGTAGA AGAATAATTG
TATGATAAAC TTAAACAAGA TATAGATGGT GGATGGTTGT ACCTGACCAA GTAAATGATA ATTTCTTATG ATTAACATAA
ATCACATTCA ATTCTGTA

>Vigan.05G028000.01
ATGGCGGCTA CTAGAGCAAT AACCATAGCG AGCAATTCCA CATGCACTCT CCTTAGAAAG AAACCCTTTG TGGGTGGCAC
TGCCCTTTCC CTCAACAACC TCAAATTTGG TCGGACTAGG AGGTCTTATA CCTGCAGGGC CATCTACAAT CCCCAGATTG
TCGTCAAGGA AGAAGGCCAG CCCGAAACCC TCGACTATAG AGTTTTCTTT GTTGACCAAT CTGGCAAGAA GGTTTCTCCC
TGGCATGATA TTCCATTGCG ATCGGGTGAT GATATCTTCA ACTTCATTGT TGAGATTCCT AAAGAATCCA GTGCAAAGAT
GGAGGTTGCA ACTGATGAGG CTTTCACTCC CATAAAACAA GATACAAAAA AGGGAAAGCT CCGATATTAT CCCTACAATA
TACATTGGAA CTATGGCTTA CTTCCACAAA CATGGGAAGA TCCATCTTTT GCAAACTCTG AAGTTGAAGG AGCACTGGGA
GATAACGATC CAGTTGATGT TGTTGAGATT GGTGAAAGAC AGGGGAAAAT AGGTGAGGTT CTGAAGGTCA AACCCTTGGG
TGCATTAGCC ATGATTGATG AAGGAGAACT TGATTGGAAA ATAGTTGCAA TCTCATTAGA TGATCCAAGG GCGTCATTGG
TGAATGATGT TAATGACGTT GAGAAGCATT TTCCTGGAAC TCTAACTGCA ATTAGGGACT GGTTCAGAGA CTACAAGATA
CCTGATGGAA AGCCTGCTAA TAAATTTGGG CTCGGCAACC AGGCAGCTAA TAAGGAATAC GCGCTTAAGG TTATCACAGA
GACCAACGAG TCCTGGAATA AACTTATTAA GAGATCAATT CCTGCAGGAG AGTTGTCTCT TGCGTAG

>Vigan.05G028000.01
MAATRAITIA SNSTCTLLRK KPFVGGTALS LNNLKFGRTR RSYTCRAIYN PQIVVKEEGQ PETLDYRVFF VDQSGKKVSP
WHDIPLRSGD DIFNFIVEIP KESSAKMEVA TDEAFTPIKQ DTKKGKLRYY PYNIHWNYGL LPQTWEDPSF ANSEVEGALG
DNDPVDVVEI GERQGKIGEV LKVKPLGALA MIDEGELDWK IVAISLDDPR ASLVNDVNDV EKHFPGTLTA IRDWFRDYKI
PDGKPANKFG LGNQAANKEY ALKVITETNE SWNKLIKRSI PAGELSLA*