GBrowse Details

Vigan.05G028100.01

Basic Information:
Name: Vigan.05G028100.01
Multiple alignment
Variant Information
Position: Chr05:1825211..1827741 (+ strand)
Length: 2531
Functional Information:
Description: Similar to Uncharacterized protein. [I1M2I9, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.07,0.00,0.83,0.43,5.57,0.00,0.46,0.54
Arabidopsis thaliana homolog: AT4G37850.1
Automatic updates:
Name: NM_001252914 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor bHLH25-like (LOC100790824), mRNA.
PubMed ID: 24707045 NCBI(pubmed)
9712587 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:1825211..1825330 (+ strand)
Length: 120
Type: five_prime_UTR
Position: Chr05:1825331..1825381 (+ strand)
Length: 51
Type: CDS
Position: Chr05:1825582..1826130 (+ strand)
Length: 549
Type: CDS
Position: Chr05:1826799..1827170 (+ strand)
Length: 372
Type: CDS
Position: Chr05:1827323..1827391 (+ strand)
Length: 69
Type: CDS
Position: Chr05:1827392..1827741 (+ strand)
Length: 350
Type: three_prime_UTR


>Vigan.05G028100.01
TTTTTTGCGT AATGGCCATT CAGCAACCAG TACTATTAGC TACATGAATT TTAAGTACCA GACTGATGAG CTTCTTCTTA
CTTCTGTTCC AGGATATTTT CTTCAGCCGT TTTTCATTGC ATGAGGAGTT TCCATATGGA GATTTCATCA ATCAGAGGGT
TACCTGAACT GGGGATAATA GAGGATCCTA ACTTTCTCCA TCAGTGGCAG TTAAACCCAA CTGATACAAG TAGTTTAACA
GGAGCTGCTT TTGGTGAGAG TTTGCAGAAG CTCTCATTTT CTGGCAACTC AAACTTCAAC CCCAAAGCAT CCATGGAAAC
ATCACCAAAT GGAAATGAAA GACCAACAAA ACAGCTCAGA AACAACAGCT GGAATGGCAA GAAAAGTCAG CATCAGACAC
CAGAGACACA ATATGCTTCA TGCTCAAATC TTCTTTCATT TGTTAATTCG AATTACATAA ATGAATTGGG ACTAGGGAAG
CCTAAGGTGG AAATGGCGTG TCCTAAAATT GATAACAGTA CCCTTGCAGA GATGTTGATC TCTCAAGGAA CCTTGGGAAA
TCAAAACTAT CACTTCAAGG CCAACCAGGA GGCCATAAAG ATTGAAACAC GTCCAAAACT TTCTCAACCT CAGGACCACA
TAATAGCTGA AAGGAAGCGG AGAGAGAAAC TCAGCCAACG GTTCATTGCT CTATCTGCTC TCGTTCCTGG CCTAAAGAAG
ATGGACAAAG CTTCTGTTCT TGGAGAAGCA GTGAAGTACT TGAAACAGTT GCAAGAGAAA GTGAGTACTC TTGAGGAGGA
ACAAAACAGA AAGAGAACTG TGGAATCTGT TGTAACAGTG AAGAAATCTC AGCTATCAGA TGATGCTGAA GACTCTTCTA
GTTCAGATAC CGGTGGTACA TTGGAAGAGG CACTACCTGA AATTGAAGCA AGATTTTGCG AAAGAAATGT TCTCATAAGA
ATACACTGTG AGAAGAAAAA AGGAATCATA GAGAAAACGA TCAGCGAAAT TGAGAAACTC CATTTAAAAG TTACCAATAG
CAGTGCCTTG TCATTTGGGA GTTTCATTCT TGATATAACT ATTATTGCTC AGATGGATAT GGAATTTTGC ATGACAGTGA
AGGATCTCGT GAGAAGTTTA CGCTCAGCTT TTTCATATTA GTATGAACAA GTTTCATATT AATTCAAGTA TGAACAAGGT
TCACGAGGAG TGCAACCAAT GTTATCAAGG CCTGCAGTGT CTGCCACCTT CACCATTGCT CTGAGGTTCA TTTTGCAGGA
GGGTTTTTCC ATGGTTAACT TGTTGACAGT GTTATTGTCA CCCTCTTGTT TTATGAGTGA ATGTAGAACT TCTTATGCAT
CTTTTTGCAG GAAGTTGAGA AGATCAACTG TACCTGTTTT CCATCTATTT CTTACAGGGC TTTGTTCAGT CACTTGTTAT
GTTTGTTTTC CCAAGTGTTA TGAATTACTT TTTTTTATTG AAATAAATAG GTTTTGGTTA CATTGTCAGT G

>Vigan.05G028100.01
ATGAGGAGTT TCCATATGGA GATTTCATCA ATCAGAGGGT TACCTGAACT GGGGATAATA GAGGATCCTA ACTTTCTCCA
TCAGTGGCAG TTAAACCCAA CTGATACAAG TAGTTTAACA GGAGCTGCTT TTGGTGAGAG TTTGCAGAAG CTCTCATTTT
CTGGCAACTC AAACTTCAAC CCCAAAGCAT CCATGGAAAC ATCACCAAAT GGAAATGAAA GACCAACAAA ACAGCTCAGA
AACAACAGCT GGAATGGCAA GAAAAGTCAG CATCAGACAC CAGAGACACA ATATGCTTCA TGCTCAAATC TTCTTTCATT
TGTTAATTCG AATTACATAA ATGAATTGGG ACTAGGGAAG CCTAAGGTGG AAATGGCGTG TCCTAAAATT GATAACAGTA
CCCTTGCAGA GATGTTGATC TCTCAAGGAA CCTTGGGAAA TCAAAACTAT CACTTCAAGG CCAACCAGGA GGCCATAAAG
ATTGAAACAC GTCCAAAACT TTCTCAACCT CAGGACCACA TAATAGCTGA AAGGAAGCGG AGAGAGAAAC TCAGCCAACG
GTTCATTGCT CTATCTGCTC TCGTTCCTGG CCTAAAGAAG ATGGACAAAG CTTCTGTTCT TGGAGAAGCA GTGAAGTACT
TGAAACAGTT GCAAGAGAAA GTGAGTACTC TTGAGGAGGA ACAAAACAGA AAGAGAACTG TGGAATCTGT TGTAACAGTG
AAGAAATCTC AGCTATCAGA TGATGCTGAA GACTCTTCTA GTTCAGATAC CGGTGGTACA TTGGAAGAGG CACTACCTGA
AATTGAAGCA AGATTTTGCG AAAGAAATGT TCTCATAAGA ATACACTGTG AGAAGAAAAA AGGAATCATA GAGAAAACGA
TCAGCGAAAT TGAGAAACTC CATTTAAAAG TTACCAATAG CAGTGCCTTG TCATTTGGGA GTTTCATTCT TGATATAACT
ATTATTGCTC AGATGGATAT GGAATTTTGC ATGACAGTGA AGGATCTCGT GAGAAGTTTA CGCTCAGCTT TTTCATATTA
G

>Vigan.05G028100.01
MRSFHMEISS IRGLPELGII EDPNFLHQWQ LNPTDTSSLT GAAFGESLQK LSFSGNSNFN PKASMETSPN GNERPTKQLR
NNSWNGKKSQ HQTPETQYAS CSNLLSFVNS NYINELGLGK PKVEMACPKI DNSTLAEMLI SQGTLGNQNY HFKANQEAIK
IETRPKLSQP QDHIIAERKR REKLSQRFIA LSALVPGLKK MDKASVLGEA VKYLKQLQEK VSTLEEEQNR KRTVESVVTV
KKSQLSDDAE DSSSSDTGGT LEEALPEIEA RFCERNVLIR IHCEKKKGII EKTISEIEKL HLKVTNSSAL SFGSFILDIT
IIAQMDMEFC MTVKDLVRSL RSAFSY*