GBrowse Details

Vigan.05G031500.01

Basic Information:
Name: Vigan.05G031500.01
Multiple alignment
Variant Information
Position: Chr05:2027301..2029662 (- strand)
Length: 2362
Functional Information:
Description: Similar to 50S ribosomal protein L11, chloroplastic-like. [XP_003542152.1, Glycine max]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L11/L12 (IPR000911)
Ribosomal protein L11, bacterial-type (IPR006519)
Ribosomal protein L11, C-terminal (IPR020783)
Ribosomal protein L11, N-terminal (IPR020784)
Ribosomal protein L11, conserved site (IPR020785)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.80,8.33,26.01,107.29,8.32,28.80,4.63,18.55
Arabidopsis thaliana homolog: AT1G32990.1
Automatic updates:
Name: NM_001251709 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306424 (LOC100306424), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:2027301..2027854 (- strand)
Length: 554
Type: three_prime_UTR
Position: Chr05:2027855..2028063 (- strand)
Length: 209
Type: CDS
Position: Chr05:2028878..2028941 (- strand)
Length: 64
Type: CDS
Position: Chr05:2029017..2029189 (- strand)
Length: 173
Type: CDS
Position: Chr05:2029281..2029497 (- strand)
Length: 217
Type: CDS
Position: Chr05:2029498..2029662 (- strand)
Length: 165
Type: five_prime_UTR


>Vigan.05G031500.01
CTATGACCCA ATTAAGTTCA GTCCAGCATC TTCTTACCTC TTACCACCTG TAGATTGAGG ACTGTCGGAC GACGCCGTAT
CAATATATCT TCTCCAGCCT TATCGTTTAT CTGCCATCCA TCAATTCGAG TTCCGTTTCT GCATTTAGTC ACCAACGACC
CTACAATGGC CTCAAGTCTT ACAACCTGTT CATCGTTGTG TTCCTCTTCT TCTTCATTCT TTTCCACTTC TGTCAAATTC
TCCTTAAACT CGAATAGAAT TTCTCTTCCG TTTCGTGGAA ACAAAACCCC TCTTCCCACT CCTTCTCCTT CCGCCCCAAT
TCGAAGGCGC TTCAATGTCA TTGCTATGGC TCCCCCTAAA CCCGGTGGGA AGGCCAAGAA AGTGGTTGGA ATTATAAAGC
TGGCTCTTGA AGCTGGGAAG GCTACACCCG CTCCTCCCGT TGGCCCTGCT CTTGGATCCA AGGGTGTCAA TATTATGGCT
TTTTGCAAGG ATTACAATGC TAAAACCGCC GATAAGCCCG GTTATGTCAT TCCCGTGGAG ATCACAGTCT ACGACGATAA
AAGCTTTACT TTCATATTGA AGACCCCACC TGCTTCGGTT CTACTTCTTA AAGCCGCTGG GGTGGAAAAG GGTTCAAAAG
ACCCCAAGGC GGAAAAGGTA GGAAAGATCA CAATTGATCA ATTGCGTACA ATTGCTACAG AAAAGCTGCC GGACTTGAAT
TGCTCGACTA TAGAATCAGC TATGAGAATT ATAGCTGGCA CTGCAGCAAA TATGGGGATT GTGGTTGATC CTCCAGTTCT
TGAACCGAAA CAGAAGGAAC TTGTGTAGTA AAGTTTCGGT TTGGCCAAGT GTATGACGGT TTTCTGTGCC TAACTATTTT
GCCTGTACAA AATCACGCAG GACATTGTTT AGTGAACATG TTTTTTCAGT AAACAGCGAG TGAAACATTT CTTTAATTAT
TTGGTATTGC ATGAACGTAA GGAACCATGC ATCAGATTAT TTGGAAGTTG GATGTATTCA AAAAGTCACT ACATATGACA
TAATAACCGT GATTTTATTT CTCCCCATAC ACAACCCAAC CAAAATTTAA AAACATTCAA ACATTGTTTT GTGGATTAGA
AGTTTATTTC GTTGAAATTG AGTCATTTTA TTCTGCTATA TCATCTTTTT ATCTTCTTTT ATGAGACTTG AAAGTACTAT
AATAATTTTG TCAAAGGCAA CCAAACGAAA GAGATAAGAC TACAACGAAG GCCCAAGACC CAAACAGAAA TGCAGCATTG
AAAGAAAGAT AAAGGGAGTC ACCATTCTTG AAGACACAAC TTTTTACCCT TCTGCCAGTT GCAATTGTTG CATATTTTAC
ATTTTTTAGA ACAACACACT AA

>Vigan.05G031500.01
ATGGCCTCAA GTCTTACAAC CTGTTCATCG TTGTGTTCCT CTTCTTCTTC ATTCTTTTCC ACTTCTGTCA AATTCTCCTT
AAACTCGAAT AGAATTTCTC TTCCGTTTCG TGGAAACAAA ACCCCTCTTC CCACTCCTTC TCCTTCCGCC CCAATTCGAA
GGCGCTTCAA TGTCATTGCT ATGGCTCCCC CTAAACCCGG TGGGAAGGCC AAGAAAGTGG TTGGAATTAT AAAGCTGGCT
CTTGAAGCTG GGAAGGCTAC ACCCGCTCCT CCCGTTGGCC CTGCTCTTGG ATCCAAGGGT GTCAATATTA TGGCTTTTTG
CAAGGATTAC AATGCTAAAA CCGCCGATAA GCCCGGTTAT GTCATTCCCG TGGAGATCAC AGTCTACGAC GATAAAAGCT
TTACTTTCAT ATTGAAGACC CCACCTGCTT CGGTTCTACT TCTTAAAGCC GCTGGGGTGG AAAAGGGTTC AAAAGACCCC
AAGGCGGAAA AGGTAGGAAA GATCACAATT GATCAATTGC GTACAATTGC TACAGAAAAG CTGCCGGACT TGAATTGCTC
GACTATAGAA TCAGCTATGA GAATTATAGC TGGCACTGCA GCAAATATGG GGATTGTGGT TGATCCTCCA GTTCTTGAAC
CGAAACAGAA GGAACTTGTG TAG

>Vigan.05G031500.01
MASSLTTCSS LCSSSSSFFS TSVKFSLNSN RISLPFRGNK TPLPTPSPSA PIRRRFNVIA MAPPKPGGKA KKVVGIIKLA
LEAGKATPAP PVGPALGSKG VNIMAFCKDY NAKTADKPGY VIPVEITVYD DKSFTFILKT PPASVLLLKA AGVEKGSKDP
KAEKVGKITI DQLRTIATEK LPDLNCSTIE SAMRIIAGTA ANMGIVVDPP VLEPKQKELV *