VIGGS:GBrowse

Vigan.05G032900.01

Basic Information:

Name:	Vigan.05G032900.01 Multiple alignment Variant Information
Position:	Chr05:2152866..2156049 (+ strand)
Length:	3184

Functional Information:

Description:	Similar to Uncharacterized protein. [I1ME85, Glycine max]
GO:	Molecular Function: protein binding (GO:0005515)
GO:	Molecular Function: zinc ion binding (GO:0008270)
InterPro:	Zinc finger, RING-type (IPR001841)
	Zinc finger, RING/FYVE/PHD-type (IPR013083)
	Nitric oxide synthase-interacting (IPR016818)
	Zinc finger, RING-type, conserved site (IPR017907)
	Replication termination factor 2, RING-finger (IPR027799)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:211.72,95.58,27.80,33.28,29.87,62.53,33.72,24.68
Arabidopsis thaliana homolog:	AT1G61620.1

Automatic updates:

Name:	NM_001317431 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max nitric oxide synthase-interacting protein-like (LOC100786703), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:2152866..2153084 (+ strand)
Length:	219
Type:	five_prime_UTR

Position:	Chr05:2153085..2153323 (+ strand)
Length:	239
Type:	CDS

Position:	Chr05:2155033..2155708 (+ strand)
Length:	676
Type:	CDS

Position:	Chr05:2155709..2156049 (+ strand)
Length:	341
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G032900.01
AAATTAGGAA AATGTTAAGA AATTTGAAAA GGCCATTAAA ACTGAGAGGC CGAGCCCATT AAGGGGTCCA GTTCAATTCT
GGTTGCTTCT TGAGGTTCCC TTGACGCGAC GGAACCAAGT CAAAGTCTAA GTTGAAGATC TGAAACCCTA GCAATCGATC
GTTTTGTGGT GTGATAAGGG ATCGTGTCTG TGTAAGTTGA GAATTGTGAT TTGAGGAAGA TGCCTCAGAG ACACTCGAAG
AACAACAACG ATCTCGCGTT CTTCACGTAC GACGAGAAGC GAAAACTAGG ATATGGGACT CAGAAAGAGA GGTTGGGGAA
AGACTCCATC AAGCCCTTCG ACGCGTGTTG CCTCTGCCTC AAATCCCTAA TCGATCCCAT GAGCTGCCAC AAGGGCCACC
TCTTTTGCAA AGAGTGCATT CTCCAGTGTC TATTGTCTCA GAAGAAAGAC ATTCAAAGGA AGCTTGCAGC CCATGCTGCT
CAGCAGAAGC AAGAAAAAGA GGAGGAAGAA GAGAAGTTAA TGTTGCAAAA GGCCAAAGAG CTTGATGCAT TTGATCAACA
GAATCATGGT GCTGTTCCAC AATATAGTGA CAGAAATTAT AGCCGTGATA AGAATGGTTT CCATGGGGCA AACAGTGTGA
AGGTCACTTC CTATGAGGAA GAAGCCCTTC GGACAATGAA GGCATTTTGG CTGCCTTCTG CTACGCCCGA AGCTTCTGTT
AAAGTAGAGG CACCTTCTAC CAGTACTATC TGTCCGGAAG GCAAGGAGAA ATTGAAGTTG AAGTCACTTT TCCCTGTCCA
GTTTACCGAG GATACGAGTG AGCAGAAAAA ATCCAAGGCA CTTGACAAGA CCTACATTTG CCCAAGCTGC AAAGTTACTC
TCACCAACAC AATGTCGCTT GTGGCCCTCA GTTCATGTGG GCATGTCTTT TGCAAGAAGT GTGCTGATAG ATTTATGGCC
GTTGATAAAG TCTGTCTTGT CTGCAACAAG GCTTGTAAAG AGAGAAATTT GGTGAGTTTG GAGAAGGGAG GAACAGGTTT
TGCTGGTCAT GGGGATCATC TTCAAGCCAC AGACTTCAAG CATTTGGGAA GTGGTAGTGG ATTGGGGCTG GTTAGACCTG
CAATGAAAAC TTGACGCCTT ATATATTGAT TTGGGTCGTT AGGTGTATGA TTCTCTATTC AGGGAAAGAA AATTATGTTT
TAACTTCTCT TAATGATGTT GTTACGTCGT TATCATGGTA ATCAGAATCT GTGTTATCTA TGGTTTTCTA CTTTGTTTAC
TGTATTTTAG TTTTTGTTCA CCCGAGAAAA ATCTTGATAA CGTGAAAAAT CGTCTTGATG GGCGAGAGAT TATCTACCTT
GTAAAAATGG ATTCATTCTT AGCTGTCACC ACTGGAGGTT GGTGGGCGAG AAATCATCTA CCATGTTGAT GGGGTTTGCT
AATATGAAAT TATTAATAAA CAGCTATAAA CTTTT

[show][hide][copy]CDS

>Vigan.05G032900.01
ATGCCTCAGA GACACTCGAA GAACAACAAC GATCTCGCGT TCTTCACGTA CGACGAGAAG CGAAAACTAG GATATGGGAC
TCAGAAAGAG AGGTTGGGGA AAGACTCCAT CAAGCCCTTC GACGCGTGTT GCCTCTGCCT CAAATCCCTA ATCGATCCCA
TGAGCTGCCA CAAGGGCCAC CTCTTTTGCA AAGAGTGCAT TCTCCAGTGT CTATTGTCTC AGAAGAAAGA CATTCAAAGG
AAGCTTGCAG CCCATGCTGC TCAGCAGAAG CAAGAAAAAG AGGAGGAAGA AGAGAAGTTA ATGTTGCAAA AGGCCAAAGA
GCTTGATGCA TTTGATCAAC AGAATCATGG TGCTGTTCCA CAATATAGTG ACAGAAATTA TAGCCGTGAT AAGAATGGTT
TCCATGGGGC AAACAGTGTG AAGGTCACTT CCTATGAGGA AGAAGCCCTT CGGACAATGA AGGCATTTTG GCTGCCTTCT
GCTACGCCCG AAGCTTCTGT TAAAGTAGAG GCACCTTCTA CCAGTACTAT CTGTCCGGAA GGCAAGGAGA AATTGAAGTT
GAAGTCACTT TTCCCTGTCC AGTTTACCGA GGATACGAGT GAGCAGAAAA AATCCAAGGC ACTTGACAAG ACCTACATTT
GCCCAAGCTG CAAAGTTACT CTCACCAACA CAATGTCGCT TGTGGCCCTC AGTTCATGTG GGCATGTCTT TTGCAAGAAG
TGTGCTGATA GATTTATGGC CGTTGATAAA GTCTGTCTTG TCTGCAACAA GGCTTGTAAA GAGAGAAATT TGGTGAGTTT
GGAGAAGGGA GGAACAGGTT TTGCTGGTCA TGGGGATCAT CTTCAAGCCA CAGACTTCAA GCATTTGGGA AGTGGTAGTG
GATTGGGGCT GGTTAGACCT GCAATGAAAA CTTGA

[show][hide][copy]PROTEIN

>Vigan.05G032900.01
MPQRHSKNNN DLAFFTYDEK RKLGYGTQKE RLGKDSIKPF DACCLCLKSL IDPMSCHKGH LFCKECILQC LLSQKKDIQR
KLAAHAAQQK QEKEEEEEKL MLQKAKELDA FDQQNHGAVP QYSDRNYSRD KNGFHGANSV KVTSYEEEAL RTMKAFWLPS
ATPEASVKVE APSTSTICPE GKEKLKLKSL FPVQFTEDTS EQKKSKALDK TYICPSCKVT LTNTMSLVAL SSCGHVFCKK
CADRFMAVDK VCLVCNKACK ERNLVSLEKG GTGFAGHGDH LQATDFKHLG SGSGLGLVRP AMKT*