GBrowse Details

Vigan.05G034500.01

Basic Information:
Name: Vigan.05G034500.01
Multiple alignment
Variant Information
Position: Chr05:2252383..2254337 (- strand)
Length: 1955
Functional Information:
Description: Similar to Endonuclease. [A5A338, Glycine max]
GO: Biological Process: DNA catabolic process (GO:0006308)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: endonuclease activity (GO:0004519)
Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
InterPro: S1/P1 nuclease (IPR003154)
Phospholipase C/P1 nuclease domain (IPR008947)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.10,0.19,32.30,2.30,0.70,20.74,1.68,7.49
Arabidopsis thaliana homolog: AT1G11190.1
Automatic updates:
Name: NM_001248396 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max endonuclease (EN1), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:2252383..2252451 (- strand)
Length: 69
Type: three_prime_UTR
Position: Chr05:2252452..2252588 (- strand)
Length: 137
Type: CDS
Position: Chr05:2252716..2252789 (- strand)
Length: 74
Type: CDS
Position: Chr05:2252880..2252944 (- strand)
Length: 65
Type: CDS
Position: Chr05:2253047..2253142 (- strand)
Length: 96
Type: CDS
Position: Chr05:2253230..2253313 (- strand)
Length: 84
Type: CDS
Position: Chr05:2253397..2253452 (- strand)
Length: 56
Type: CDS
Position: Chr05:2253569..2253676 (- strand)
Length: 108
Type: CDS
Position: Chr05:2253792..2253972 (- strand)
Length: 181
Type: CDS
Position: Chr05:2254085..2254225 (- strand)
Length: 141
Type: CDS
Position: Chr05:2254226..2254337 (- strand)
Length: 112
Type: five_prime_UTR


>Vigan.05G034500.01
TGTGTTACGT GTTCCTTCAA CACAATCATA TGCATCTCTA CATATATATA GATGTAATGT TCTATCATGA ATAAAGCAAA
GCATGTGAAG TCAGTGAGAA TTTAGTGAAG AGATGATGGG TAGACATAGA AGTTTGTGGG TGTCTCTTGT TTCATTTGGA
TTTGTCTTGT TCTTTAGCTC AACTTTCATT GGAGTGCCTA GTGCCCTTGG CTGGAGCAAA GAGGGTCATG TCATGACATG
CCAAATTGCA CAGGCACTTT TAGAGCCTGA GGCATCAGAA GCAGTGAACC GTTTGCTACC TGACTATGTG AAAGGCAACT
TATCAGCCCT TTGCGTATGG CCTGACCAAA TTAGACACGG CTACAAATAT AGGTGGACAA GTCCTCTTCA TTTCATTGAC
ACACCGGATA ATGCTTGTTC CTTTCAGTAT TCAAGAGACT GCCATGATTC CCATGGTGTG GAGGATATGT GTGTTGCTGG
TGCTGTCAAA AATTTCACTT CCCAACTCAA GCAATACAGA GAGGGGACAT CTGATCAACG ATATAATATG ACGGAGGCGT
TGTTGTTCTT GTCACATTTC ATGGGAGACA TTCATCAGCC AATGCACGTT GGATTCACCA CTGACGAAGG AGGAAACACG
ATAGAACTAC GCTGGTTCAG GCATAAATCT AATCTGCACC ATGTGTGGGA CAGAGAAATT ATCCTCAGTG CACTAGCAGA
CTATTATGAT AAGGATGTGA GCCTCCTTCT CCAAGACATT CAGAGGAACT ACACATATGG AATCTGGGTA GATGATATTT
CATCTTGGAA ACATTGTAAT GATATCTCTC AGTGTGTAAA CGATTGGGCC AAAGAAAGCA TACAAATTGC TTGCAAATGG
GGTTACGAAG GTGTTAAATC TGGAACAACT CTGGCAGATT ATTACTTCGA CTCAAGGATG CCATTTGTCA TGAAACGAAT
TGCTCAAGGT GGAATTCGAT TAGCCATGGT TTTAAATAAG GTGTTTGCTG CCTCTGAAGA AGGATTTACG TACAACAACA
ACGTAGGAAG ATAGACTCAT TCATATATAA GTTGTTTAAA CTTTGTTACT GGAATTGTCG TCTATAACTT AGTTCAGAAT
TGA

>Vigan.05G034500.01
ATGATGGGTA GACATAGAAG TTTGTGGGTG TCTCTTGTTT CATTTGGATT TGTCTTGTTC TTTAGCTCAA CTTTCATTGG
AGTGCCTAGT GCCCTTGGCT GGAGCAAAGA GGGTCATGTC ATGACATGCC AAATTGCACA GGCACTTTTA GAGCCTGAGG
CATCAGAAGC AGTGAACCGT TTGCTACCTG ACTATGTGAA AGGCAACTTA TCAGCCCTTT GCGTATGGCC TGACCAAATT
AGACACGGCT ACAAATATAG GTGGACAAGT CCTCTTCATT TCATTGACAC ACCGGATAAT GCTTGTTCCT TTCAGTATTC
AAGAGACTGC CATGATTCCC ATGGTGTGGA GGATATGTGT GTTGCTGGTG CTGTCAAAAA TTTCACTTCC CAACTCAAGC
AATACAGAGA GGGGACATCT GATCAACGAT ATAATATGAC GGAGGCGTTG TTGTTCTTGT CACATTTCAT GGGAGACATT
CATCAGCCAA TGCACGTTGG ATTCACCACT GACGAAGGAG GAAACACGAT AGAACTACGC TGGTTCAGGC ATAAATCTAA
TCTGCACCAT GTGTGGGACA GAGAAATTAT CCTCAGTGCA CTAGCAGACT ATTATGATAA GGATGTGAGC CTCCTTCTCC
AAGACATTCA GAGGAACTAC ACATATGGAA TCTGGGTAGA TGATATTTCA TCTTGGAAAC ATTGTAATGA TATCTCTCAG
TGTGTAAACG ATTGGGCCAA AGAAAGCATA CAAATTGCTT GCAAATGGGG TTACGAAGGT GTTAAATCTG GAACAACTCT
GGCAGATTAT TACTTCGACT CAAGGATGCC ATTTGTCATG AAACGAATTG CTCAAGGTGG AATTCGATTA GCCATGGTTT
TAAATAAGGT GTTTGCTGCC TCTGAAGAAG GATTTACGTA CAACAACAAC GTAGGAAGAT AG

>Vigan.05G034500.01
MMGRHRSLWV SLVSFGFVLF FSSTFIGVPS ALGWSKEGHV MTCQIAQALL EPEASEAVNR LLPDYVKGNL SALCVWPDQI
RHGYKYRWTS PLHFIDTPDN ACSFQYSRDC HDSHGVEDMC VAGAVKNFTS QLKQYREGTS DQRYNMTEAL LFLSHFMGDI
HQPMHVGFTT DEGGNTIELR WFRHKSNLHH VWDREIILSA LADYYDKDVS LLLQDIQRNY TYGIWVDDIS SWKHCNDISQ
CVNDWAKESI QIACKWGYEG VKSGTTLADY YFDSRMPFVM KRIAQGGIRL AMVLNKVFAA SEEGFTYNNN VGR*