VIGGS:GBrowse

Vigan.05G034700.01

Basic Information:

Name:	Vigan.05G034700.01 Multiple alignment Variant Information
Position:	Chr05:2257608..2260768 (+ strand)
Length:	3161

Functional Information:

Description:	Similar to quinone oxidoreductase PIG3-like. [XP_004485715.1, Cicer arietinum]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: zinc ion binding (GO:0008270)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro:	Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
	GroES (chaperonin 10)-like (IPR011032)
	Alcohol dehydrogenase, C-terminal (IPR013149)
	Alcohol dehydrogenase GroES-like (IPR013154)
	Quinone oxidoreductase PIG3 (IPR014189)
	NAD(P)-binding domain (IPR016040)
	Polyketide synthase, enoylreductase (IPR020843)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:199.06,83.95,54.41,65.35,83.41,75.43,88.45,61.29
Arabidopsis thaliana homolog:	AT4G21580.1

Automatic updates:

Name:	NM_001253315 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max quinone oxidoreductase PIG3-like (LOC100813682), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:2257608..2257972 (+ strand)
Length:	365
Type:	five_prime_UTR

Position:	Chr05:2257973..2258224 (+ strand)
Length:	252
Type:	CDS

Position:	Chr05:2258294..2258473 (+ strand)
Length:	180
Type:	CDS

Position:	Chr05:2258645..2258726 (+ strand)
Length:	82
Type:	CDS

Position:	Chr05:2258908..2259015 (+ strand)
Length:	108
Type:	CDS

Position:	Chr05:2259154..2259312 (+ strand)
Length:	159
Type:	CDS

Position:	Chr05:2260295..2260491 (+ strand)
Length:	197
Type:	CDS

Position:	Chr05:2260492..2260768 (+ strand)
Length:	277
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G034700.01
CACAAATAGG AATGTCCGAG ATATAATTTT TATTATAAAA TATTCAATAA CCAACATTTA CAATTATCCA ATTAAATCTA
TATTAAGTCT ATTTTGATGA AGGCATATTA TGATCTCTCA TATCTATATA CTCAGCTTTT AATAGAATTT TGGTTAGGGA
TTTAAATATT TAAGAATGTA GATTTTAAAC TTTTGGTGGG AAAAGAATGC TACAATTAGT AGATGTTACT GTATGAGGGA
ATACAGGATG ATAACTTTTT GCCAATATTA AATGTAATTA CTTCCTGTAT CATGTAGTAT AAATCGTGAA TAAGGAAGTA
GAGAGGGTGG GGTCTAAAAA GCGTGAAGAG AGGGAAGGGA AGAAGATGAA GGCTATAGTG ATAACGAGTC CGGGGGGTCC
TGAAGTGCTG CAGCTTCAAG AAGTTGAAGA TCCCCAACTC CAAGAGGACG AGGTTCTCAT CGGAGTCCAC GCTACTGCCC
TTAACAGAGC CGATACCCTC CAGAGGAAGG GCTTCCACCC TCCCCCTAAG GGTGCCAGTC CCTACCTGGG TCTCGAATGT
TCCGGAACAG TCCTATCTAT CGGTATAAAC GTTTCCAAGT GGAAAATCGG CGATCAGGTA TGTGCTCTTC TCGGCGGGGG
AGGTTATGCC GAGAAAGTTG CTGTTCCCGC CGGGCAAGTG CTTCCGATTC CACCAGGTGT TTCCCTCACG GATGCAGCTA
GTTTTCCTGA GGTCGCATGC ACTGTGTGGT CTACTATTTT CATGACGAGT CGTTTATCTC AAGGGGAAAC CCTGTTGGTT
CATGGTGGTT CTAGTGGGAT TGGTACATTT GCAATTCAGA TAGCTAAGTA TCGAGGGGCA AGAGTATTTG TTACTGCAGG
GAGTGAGGAG AAGCTAGCTT TTTGTAAGAG TATTGGGGCT GATGTGGCTA TTAATTACAA AACAGAAGAC TTTGTTGAGA
GGGTAAAGGA GGAAACTGGT GGACAAGGTG TTGATGTCAT TCTTGATTGT ATGGGAGCAT CCTACTATCA AAGAAATCTT
GATAGCTTGA ATTTGGATGG AAGGCTTTTT ATTATTGGCT TACAGGGTGG GGTTACTACT GAAGCAAATC TCCGCCCTTT
ACTTGCTAAG CGTCTCACAG TACAAGCGGC TGGCTTGCGT AATAGAAGTC TCGAAAATAA AGCCGCGATT ATTAGCGAAG
TGGAGAAGAA CGTTTGGCCT GCCATTGCCG AAGGAAAGGT TAAGCCTGTG GTCTACAAAT CTTTCCCTCT TGCGGAGGCT
GTTGATGCTC ATCGGCTTAT GGAAAGCAGC AAGCATATTG GGAAGATATT GCTTGTGCCA TGATCGTTGT CATAAATAAT
GTAGTTCATG TTATATATTT GAATTCTGTG TTTAGACTTT TTTGTGATGA TCTCAGGTTT CTAATAATGT TGTGCTTTGT
TGTTAAAGCA GGAATTGATA TAGCTGGTTC ATTTCAAGAA TCCTACCGTA TGTGTGTATC AATTGATGTA ACAAGAAATG
TGTTGTTAAA AGACACATTG TTGCAGCGGA CTGTTTCTTG TAAAATTGAA TACTTTTAAC TTTTCAAGTA ATATATATTG
GTTTTCAAGT CTAAAAATAA

[show][hide][copy]CDS

>Vigan.05G034700.01
ATGAAGGCTA TAGTGATAAC GAGTCCGGGG GGTCCTGAAG TGCTGCAGCT TCAAGAAGTT GAAGATCCCC AACTCCAAGA
GGACGAGGTT CTCATCGGAG TCCACGCTAC TGCCCTTAAC AGAGCCGATA CCCTCCAGAG GAAGGGCTTC CACCCTCCCC
CTAAGGGTGC CAGTCCCTAC CTGGGTCTCG AATGTTCCGG AACAGTCCTA TCTATCGGTA TAAACGTTTC CAAGTGGAAA
ATCGGCGATC AGGTATGTGC TCTTCTCGGC GGGGGAGGTT ATGCCGAGAA AGTTGCTGTT CCCGCCGGGC AAGTGCTTCC
GATTCCACCA GGTGTTTCCC TCACGGATGC AGCTAGTTTT CCTGAGGTCG CATGCACTGT GTGGTCTACT ATTTTCATGA
CGAGTCGTTT ATCTCAAGGG GAAACCCTGT TGGTTCATGG TGGTTCTAGT GGGATTGGTA CATTTGCAAT TCAGATAGCT
AAGTATCGAG GGGCAAGAGT ATTTGTTACT GCAGGGAGTG AGGAGAAGCT AGCTTTTTGT AAGAGTATTG GGGCTGATGT
GGCTATTAAT TACAAAACAG AAGACTTTGT TGAGAGGGTA AAGGAGGAAA CTGGTGGACA AGGTGTTGAT GTCATTCTTG
ATTGTATGGG AGCATCCTAC TATCAAAGAA ATCTTGATAG CTTGAATTTG GATGGAAGGC TTTTTATTAT TGGCTTACAG
GGTGGGGTTA CTACTGAAGC AAATCTCCGC CCTTTACTTG CTAAGCGTCT CACAGTACAA GCGGCTGGCT TGCGTAATAG
AAGTCTCGAA AATAAAGCCG CGATTATTAG CGAAGTGGAG AAGAACGTTT GGCCTGCCAT TGCCGAAGGA AAGGTTAAGC
CTGTGGTCTA CAAATCTTTC CCTCTTGCGG AGGCTGTTGA TGCTCATCGG CTTATGGAAA GCAGCAAGCA TATTGGGAAG
ATATTGCTTG TGCCATGA

[show][hide][copy]PROTEIN

>Vigan.05G034700.01
MKAIVITSPG GPEVLQLQEV EDPQLQEDEV LIGVHATALN RADTLQRKGF HPPPKGASPY LGLECSGTVL SIGINVSKWK
IGDQVCALLG GGGYAEKVAV PAGQVLPIPP GVSLTDAASF PEVACTVWST IFMTSRLSQG ETLLVHGGSS GIGTFAIQIA
KYRGARVFVT AGSEEKLAFC KSIGADVAIN YKTEDFVERV KEETGGQGVD VILDCMGASY YQRNLDSLNL DGRLFIIGLQ
GGVTTEANLR PLLAKRLTVQ AAGLRNRSLE NKAAIISEVE KNVWPAIAEG KVKPVVYKSF PLAEAVDAHR LMESSKHIGK
ILLVP*