GBrowse Details

Vigan.05G039500.01

Basic Information:
Name: Vigan.05G039500.01
Multiple alignment
Variant Information
Position: Chr05:2616468..2620163 (+ strand)
Length: 3696
Functional Information:
Description: Similar to NADH-quinone oxidoreductase subunit I. [G7ZWQ4, Medicago truncatula]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: membrane (GO:0016020)
Molecular Function: oxidoreductase activity, acting on NAD(P)H (GO:0016651)
Molecular Function: iron-sulfur cluster binding (GO:0051536)
Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539)
InterPro: 4Fe-4S binding domain (IPR001450)
NADH-quinone oxidoreductase, chain I (IPR010226)
4Fe-4S ferredoxin-type, iron-sulpur binding domain (IPR017896)
4Fe-4S ferredoxin, iron-sulphur binding, conserved site (IPR017900)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:211.29,113.28,80.04,53.40,100.95,106.41,92.89,59.64
Arabidopsis thaliana homolog: AT1G16700.1
Automatic updates:
Name: NM_001249607 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499826 (LOC100499826), transcript variant 1, mRNA; nuclear gene for mitochondrial product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001251157 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306645 (LOC100306645), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Name: NM_001399509 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499826 (LOC100499826), transcript variant 2, mRNA; nuclear gene for mitochondrial product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:2616468..2616778 (+ strand)
Length: 311
Type: five_prime_UTR
Position: Chr05:2616779..2616832 (+ strand)
Length: 54
Type: CDS
Position: Chr05:2617179..2617257 (+ strand)
Length: 79
Type: CDS
Position: Chr05:2617809..2617862 (+ strand)
Length: 54
Type: CDS
Position: Chr05:2617959..2618050 (+ strand)
Length: 92
Type: CDS
Position: Chr05:2618134..2618247 (+ strand)
Length: 114
Type: CDS
Position: Chr05:2619169..2619236 (+ strand)
Length: 68
Type: CDS
Position: Chr05:2619314..2619425 (+ strand)
Length: 112
Type: CDS
Position: Chr05:2619602..2619697 (+ strand)
Length: 96
Type: CDS
Position: Chr05:2619698..2620163 (+ strand)
Length: 466
Type: three_prime_UTR


>Vigan.05G039500.01
TTTTTCTCTT CGCTTTTTTT TTTTTCCTTT CTTAAACACT TCCACCATCA ATGTTAAACG CGGAACCCAT ACAATTTATC
GTTTTCTTTT ATTGCTTCAA TTTTTGCGCT ATTTCTCAAT ATTAATTTGT GTTTGGTTCA ACCACCACTT GTGTACCCCT
TTTGATTCAA TATTCTCTTC CCACTTTTTC GGTTCTTGGT TACGCCGTTG AATCTTTGTA AATAATTGTT TCGCTCGAAC
TTAATTGTTA TGTTTGAATT CATTACCATA CTGCATTTGA TTCTTTAACT TTTCATTTCC AGGTTTAGGG AATGGCTGCG
ATTTTAGCTC GGAAATCACT CCTTGCTCTT CGTGCCCGCC AATTGGCTGT AAGCGGTCAA GGCCTGCACA GCTCCCAATC
CTATGGGCTT CGATTAAGTG CACACTCCTT CTCTACCAAA CTAGAGGATG AACAAAGGGA GCAACTTGCA AAGGAAATTT
CAAAGGATTG GAGTTCTGTT TTTGAACGAA GCATCAACAC TCTTTTTCTC ACTGAAATGG TTCGAGGTCT AATGCTTACT
CTGAAATACT TCTTTGAAAC AAAAGTTACA ATCAATTATC CATTTGAGAA AGGACCTTTG AGCCCTCGTT TTCGTGGTGA
ACATGCTCTC CGAAGATATC CAACAGGGGA GGAACGTTGT ATTGCTTGCA AACTTTGTGA AGCTATATGC CCTGCACAAG
CAATCACAAT TGAGGCTGAG GAGCGAGAAG ATGGCAGCCG CAGGACAACT CGGTACGATA TTGACATGAC CAAGTGCATC
TATTGTGGTT TTTGTCAAGA GGCCTGCCCT GTTGATGCCA TTGTTGAAGG GCCAAACTTT GAATTTGCTA CAGAGACTCA
TGAGGAACTT TTATATGACA AAGAGAAGCT GCTTGAAAAC GGTGATCGAT GGGAGACTGA AATTGCAGAG AACCTTAGAT
CTGAAAGCCT TTACCGCTGA ATTTTACCAT GTGATCATTG CCTGTTGCTT TTTCGGTGGC AATGATGAAT AAAATGACCA
CTGAATGGTT TTAAAGAAGT GTATGCATTC ACGATTGTTA AGTCAGTTTT TTTGTCAATG TTTTTGCATT GCTGTTAAGT
ATACAATATT GTTGATGTTT ATCTTATTGA AATCTTGAAC AACTATGGAA ATAATTGAAC TATTCAACAG ATTAGCAACT
TGTAGGCGTA ATTCATCCTT AGAGGATGGA AGTACTGACG CAGTAATGCA GTTCACAGAA TCAAAAACAT TGAGGATTCG
GTGTCAATTC TGATGAAATA GTAAAATCAC TTTTGGTAGG GAATTTTAAC ACGGGTAGGG ATCAATGTAG CTTTTGGCCC
TGCTTTACTT TTTGATTTTC TTTACTCAAA ATTACCATTG TTCATTTTCT GTTTAGTATT TACAAAGTGG AAATTTATTT
GCCTTT

>Vigan.05G039500.01
ATGGCTGCGA TTTTAGCTCG GAAATCACTC CTTGCTCTTC GTGCCCGCCA ATTGGCTGTA AGCGGTCAAG GCCTGCACAG
CTCCCAATCC TATGGGCTTC GATTAAGTGC ACACTCCTTC TCTACCAAAC TAGAGGATGA ACAAAGGGAG CAACTTGCAA
AGGAAATTTC AAAGGATTGG AGTTCTGTTT TTGAACGAAG CATCAACACT CTTTTTCTCA CTGAAATGGT TCGAGGTCTA
ATGCTTACTC TGAAATACTT CTTTGAAACA AAAGTTACAA TCAATTATCC ATTTGAGAAA GGACCTTTGA GCCCTCGTTT
TCGTGGTGAA CATGCTCTCC GAAGATATCC AACAGGGGAG GAACGTTGTA TTGCTTGCAA ACTTTGTGAA GCTATATGCC
CTGCACAAGC AATCACAATT GAGGCTGAGG AGCGAGAAGA TGGCAGCCGC AGGACAACTC GGTACGATAT TGACATGACC
AAGTGCATCT ATTGTGGTTT TTGTCAAGAG GCCTGCCCTG TTGATGCCAT TGTTGAAGGG CCAAACTTTG AATTTGCTAC
AGAGACTCAT GAGGAACTTT TATATGACAA AGAGAAGCTG CTTGAAAACG GTGATCGATG GGAGACTGAA ATTGCAGAGA
ACCTTAGATC TGAAAGCCTT TACCGCTGA

>Vigan.05G039500.01
MAAILARKSL LALRARQLAV SGQGLHSSQS YGLRLSAHSF STKLEDEQRE QLAKEISKDW SSVFERSINT LFLTEMVRGL
MLTLKYFFET KVTINYPFEK GPLSPRFRGE HALRRYPTGE ERCIACKLCE AICPAQAITI EAEEREDGSR RTTRYDIDMT
KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL LENGDRWETE IAENLRSESL YR*