GBrowse Details

Vigan.05G039600.01

Basic Information:
Name: Vigan.05G039600.01
Multiple alignment
Variant Information
Position: Chr05:2622547..2626166 (+ strand)
Length: 3620
Functional Information:
Description: Similar to Uncharacterized protein. [I1MEF8, Glycine max]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: clathrin coat of trans-Golgi network vesicle (GO:0030130)
Cellular Component: clathrin coat of coated pit (GO:0030132)
Molecular Function: structural molecule activity (GO:0005198)
InterPro: Clathrin light chain (IPR000996)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:62.10,76.08,95.64,94.47,139.09,160.44,103.08,110.08
Automatic updates:
Name: NM_001254187 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100813474 (LOC100813474), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:2622547..2622736 (+ strand)
Length: 190
Type: five_prime_UTR
Position: Chr05:2622737..2623101 (+ strand)
Length: 365
Type: CDS
Position: Chr05:2625275..2625428 (+ strand)
Length: 154
Type: CDS
Position: Chr05:2625515..2625940 (+ strand)
Length: 426
Type: CDS
Position: Chr05:2625941..2626166 (+ strand)
Length: 226
Type: three_prime_UTR


>Vigan.05G039600.01
TTTTCATATA TAGATTGCAT GTGAATTTTC TCATTTTGTT TTGTATTATT ATTCACCGTT AAGTATTTAA AAAGTGGAAG
AGTTTAGAGT GCTGAACCTC CGTCAAAGCA AAGCCACAGT GTTCCCATCA TTTGCGTTTA ACAGAAGAGA GAGAAACCAT
TTGTAGAGAG AGAAACTCTC AGTCGCAGAC ATGTCTTCCT TCGATGCCTT CACCGATGAC TTGAACGTCA ACTCTTCTTC
AACTCACCAA CACGACGACG ACGAGGACAA CTTCTCCGGC TACGGCGGCT ACTCCTCCTT CACCGGCGGT TTTTCCGCCG
ATGGTGATGT CCCCGTCGAT CACTCCGCCG CCGCTTCGCC GGAGATCTAC GGCTTTACTG ATCCGGCTCC CGCTTACTCT
CAGTCTCCCT TCGAATCTGC TTCCGTAGAG AATGTAAACG AAAACGGAAA CGGCTACGGT GACGGCGACG GAGTTTTCGT
TTCGGACGGT CCAGTGCTTC CTCCGCCGAC CGAGATGGAG CCGGAGGAAG GCTACGCTCT TCGCGAGTGG CGCCGTCAAA
ATGCCATTCT CCTAGAAGAG AAGGAGAAAA GAGAAAAAGA GATGAGGTTG AAGATTATTG AAGAAGCTGA GGAGTATAAG
GTGGCTTTCT ATGAGAAGAG GAAGGTTAAT GTTGAGTCTA GCAAGGTTCA AAATAGAGAG AGGGAGAAGT TATTCTTGGC
TAGTCAAGAG AAGTTTCACA AGGAGGCAGA CAAAGCTTAT TGGAAAGCAA TTGCAGAGCT CGTTCCTCGT GAAGTTCCCA
ACATTGAAAA GAAAAGAGGC AAAAAGGATC AGGACAAGAA GCCATCAATT ACAGTCATTC AAGGCCCAAA GCCCGGCAAA
CCCACGGATC TGTCTAGGTT GCGGCAAATA CTGTTAAAGC TGAAGCATAC ACCACCACCT CACATGATTC CTCCGCCACC
TGCTCCTGCT AAAGATGCCA AAGACGGTAA GGATGGAAAA GAGAAAGCAT CAAAAGCAAC TGGATCTGCA GCAGAAGGTG
CAACTGCTTC ACAGCCAAAG GATGCTGCCT CTAATGGCGC CGCAGACGAA CTCCAGAAGG AAGCTCCTGC CACTGAGGAG
CAGGCTGCTG CATGATTTTT GCGTATCATA CCTCAGTTCC CCTTCAATCT TTCTTCTGGC ATCTCTTTCT CCACATGCTG
TCTTTAGTGA ATCTTTTTGC CCTGTTATTA GCTTCTAATG CTTATTGGTT ACATTTTATT ACCAACTTTA AGGTTTTATG
TGAATTAAAT CCATTGACAA TTATGACATG GAGATTCAAT GATCATGGGT TAATACATCC TATTAGACAG AAAGTTATCT
G

>Vigan.05G039600.01
ATGTCTTCCT TCGATGCCTT CACCGATGAC TTGAACGTCA ACTCTTCTTC AACTCACCAA CACGACGACG ACGAGGACAA
CTTCTCCGGC TACGGCGGCT ACTCCTCCTT CACCGGCGGT TTTTCCGCCG ATGGTGATGT CCCCGTCGAT CACTCCGCCG
CCGCTTCGCC GGAGATCTAC GGCTTTACTG ATCCGGCTCC CGCTTACTCT CAGTCTCCCT TCGAATCTGC TTCCGTAGAG
AATGTAAACG AAAACGGAAA CGGCTACGGT GACGGCGACG GAGTTTTCGT TTCGGACGGT CCAGTGCTTC CTCCGCCGAC
CGAGATGGAG CCGGAGGAAG GCTACGCTCT TCGCGAGTGG CGCCGTCAAA ATGCCATTCT CCTAGAAGAG AAGGAGAAAA
GAGAAAAAGA GATGAGGTTG AAGATTATTG AAGAAGCTGA GGAGTATAAG GTGGCTTTCT ATGAGAAGAG GAAGGTTAAT
GTTGAGTCTA GCAAGGTTCA AAATAGAGAG AGGGAGAAGT TATTCTTGGC TAGTCAAGAG AAGTTTCACA AGGAGGCAGA
CAAAGCTTAT TGGAAAGCAA TTGCAGAGCT CGTTCCTCGT GAAGTTCCCA ACATTGAAAA GAAAAGAGGC AAAAAGGATC
AGGACAAGAA GCCATCAATT ACAGTCATTC AAGGCCCAAA GCCCGGCAAA CCCACGGATC TGTCTAGGTT GCGGCAAATA
CTGTTAAAGC TGAAGCATAC ACCACCACCT CACATGATTC CTCCGCCACC TGCTCCTGCT AAAGATGCCA AAGACGGTAA
GGATGGAAAA GAGAAAGCAT CAAAAGCAAC TGGATCTGCA GCAGAAGGTG CAACTGCTTC ACAGCCAAAG GATGCTGCCT
CTAATGGCGC CGCAGACGAA CTCCAGAAGG AAGCTCCTGC CACTGAGGAG CAGGCTGCTG CATGA

>Vigan.05G039600.01
MSSFDAFTDD LNVNSSSTHQ HDDDEDNFSG YGGYSSFTGG FSADGDVPVD HSAAASPEIY GFTDPAPAYS QSPFESASVE
NVNENGNGYG DGDGVFVSDG PVLPPPTEME PEEGYALREW RRQNAILLEE KEKREKEMRL KIIEEAEEYK VAFYEKRKVN
VESSKVQNRE REKLFLASQE KFHKEADKAY WKAIAELVPR EVPNIEKKRG KKDQDKKPSI TVIQGPKPGK PTDLSRLRQI
LLKLKHTPPP HMIPPPPAPA KDAKDGKDGK EKASKATGSA AEGATASQPK DAASNGAADE LQKEAPATEE QAAA*