GBrowse Details

Vigan.05G040400.01

Basic Information:
Name: Vigan.05G040400.01
Multiple alignment
Variant Information
Position: Chr05:2697080..2703252 (+ strand)
Length: 6173
Functional Information:
Description: Similar to RING finger protein 141. [W9RNK9, Morus notabilis.]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, RING-type, conserved site (IPR017907)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.00,4.50,6.35,7.40,2.29,13.27,6.75,4.73
Automatic updates:
Name: NM_001254989 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RING Zn-finger domain-containing protein (LOC100789769), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:2697080..2697275 (+ strand)
Length: 196
Type: five_prime_UTR
Position: Chr05:2697276..2697355 (+ strand)
Length: 80
Type: CDS
Position: Chr05:2698389..2698539 (+ strand)
Length: 151
Type: CDS
Position: Chr05:2698632..2698698 (+ strand)
Length: 67
Type: CDS
Position: Chr05:2698791..2699025 (+ strand)
Length: 235
Type: CDS
Position: Chr05:2702677..2702887 (+ strand)
Length: 211
Type: CDS
Position: Chr05:2702888..2703252 (+ strand)
Length: 365
Type: three_prime_UTR


>Vigan.05G040400.01
CACAACTAAG AATAATATTT GAGGTAGTTG TGCCACGTGT CCTACCGAAA GGTTTTGGTG ATGGCTTTGA AGAAGAGTGT
GTGTGACACT GTGAACGTGG CTATAGTGGA GTTGAGAGAG AGAACGCATG AAAATTTGTA GTGGGTTTTG GTTTAGGAGT
TGGGTTTAGA ATCTTGTTCG GAATTGTGAG AGAGTTATGT ACATAGCTTC CATGGGAAGG TCTTTCAAGG ACTCTCTGAA
ACTGCTTGAA GCTGATATTC ACCATGCCAA TACCCTGGCA TCAGATTTTC CAAGGGAATA TGACGGTGCA TGCCTTCAAA
TGAGAATGTC ATACAGTATG GCAGCACACC TATTTCTCTT TTTGGTACAA TGGACAGATT GCAATCTTGC CGGGGCCCTA
GGATTGTTAA GAATCCTAAT ATACAAGGTT TATGTAGATG GGACAACTAC CATGTCTACC CATGAAAGGA AAGCAAGTAT
TAGAGAATTC TATGCGGTCA TATATCCCTC ATTGTTGCAA CTGCAAAAAG GTGTAACTGA TACAGAGGAC AAAAAACAGA
AGGCTGTATG CTTGGAGAGG TATCGGAAAA GAGATGAAGA TGAGCACAGG CAGCCTTCGG ATATAGACAT TGAAAGGGAA
GAGGAATGTG GAATATGCAT GGAGATGAAC AGTAAGATTG TGTTACCCGA CTGCAACCAT GTCATGTGCC TGAAATGTTA
CCACGAATGG AGAACAAGAT CACAGTCATG CCCCTTTTGC CGTGACAGTC TCAAGAGAGT AAACTCAGGC GATCTCTGGG
TGTTCACTGA TGGTAGGGAT GTTGTAGACA TGGCAACAGT GACAAGAGAG AATCTTAAAA GGCTTTTCAT GTACATAGAT
AAGTTGCCTT TGATCATTCC AGACTCTCTT TTTGACACTT ATGACTCTCA TCTAAGATGA GTGGTTTTAA TCAGTGTCTC
TGGTGTTGGA GGGGCAGTTC CTTTCAATTT AGTAACATAA ACTCGGAATG TCATTTGGTA AATTTAGTCT ATAGAGTCGC
AGTGTTGCTT CCCACGTCTT GCAAAAAAGT TTCCAACCCT GAGTTTACTG CGGGTTGGTG GTGAAGATGA GTATGTGCTC
ATTTGTCTTT GTATATCCTG TACAGATTCA ATTGCTTGTT CAGAAGAGAT CTGTTTCCAT ATTCCGTGTC TCAAAACAGT
ATATTTTCCA TGGATCCCAC CTATTTAGTT TTGAATGGAG CAAAATCAGT ATCTATAATG TGATTCAATT CTCTTCACTA
GTATTGTACC AACACATCCT TTAAT

>Vigan.05G040400.01
ATGTACATAG CTTCCATGGG AAGGTCTTTC AAGGACTCTC TGAAACTGCT TGAAGCTGAT ATTCACCATG CCAATACCCT
GGCATCAGAT TTTCCAAGGG AATATGACGG TGCATGCCTT CAAATGAGAA TGTCATACAG TATGGCAGCA CACCTATTTC
TCTTTTTGGT ACAATGGACA GATTGCAATC TTGCCGGGGC CCTAGGATTG TTAAGAATCC TAATATACAA GGTTTATGTA
GATGGGACAA CTACCATGTC TACCCATGAA AGGAAAGCAA GTATTAGAGA ATTCTATGCG GTCATATATC CCTCATTGTT
GCAACTGCAA AAAGGTGTAA CTGATACAGA GGACAAAAAA CAGAAGGCTG TATGCTTGGA GAGGTATCGG AAAAGAGATG
AAGATGAGCA CAGGCAGCCT TCGGATATAG ACATTGAAAG GGAAGAGGAA TGTGGAATAT GCATGGAGAT GAACAGTAAG
ATTGTGTTAC CCGACTGCAA CCATGTCATG TGCCTGAAAT GTTACCACGA ATGGAGAACA AGATCACAGT CATGCCCCTT
TTGCCGTGAC AGTCTCAAGA GAGTAAACTC AGGCGATCTC TGGGTGTTCA CTGATGGTAG GGATGTTGTA GACATGGCAA
CAGTGACAAG AGAGAATCTT AAAAGGCTTT TCATGTACAT AGATAAGTTG CCTTTGATCA TTCCAGACTC TCTTTTTGAC
ACTTATGACT CTCATCTAAG ATGA

>Vigan.05G040400.01
MYIASMGRSF KDSLKLLEAD IHHANTLASD FPREYDGACL QMRMSYSMAA HLFLFLVQWT DCNLAGALGL LRILIYKVYV
DGTTTMSTHE RKASIREFYA VIYPSLLQLQ KGVTDTEDKK QKAVCLERYR KRDEDEHRQP SDIDIEREEE CGICMEMNSK
IVLPDCNHVM CLKCYHEWRT RSQSCPFCRD SLKRVNSGDL WVFTDGRDVV DMATVTRENL KRLFMYIDKL PLIIPDSLFD
TYDSHLR*