GBrowse Details

Vigan.05G041100.01

Basic Information:
Name: Vigan.05G041100.01
Multiple alignment
Variant Information
Position: Chr05:2768346..2769868 (+ strand)
Length: 1523
Functional Information:
Description: Similar to Uncharacterized protein. [I1M253, Glycine max]
InterPro: Rubber elongation factor (IPR008802)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:147.50,86.49,178.12,82.25,122.16,141.49,34.48,59.45
Arabidopsis thaliana homolog: AT3G05500.1
Automatic updates:
Name: NM_001363754 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max metal response element-binding transcription factor PvMTF-1-like (LOC100808646), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:2768346..2768589 (+ strand)
Length: 244
Type: five_prime_UTR
Position: Chr05:2768590..2768619 (+ strand)
Length: 30
Type: CDS
Position: Chr05:2769082..2769654 (+ strand)
Length: 573
Type: CDS
Position: Chr05:2769655..2769868 (+ strand)
Length: 214
Type: three_prime_UTR

>Vigan.05G041100.01 class=Sequence position=Chr05:2768346..2769868 (+ strand)
TGAAAGGAAT ATTCTAGATT CTACAGTGTT TTGAAACTTA ACCTGTAAGA AACAGTATTA TAGAAAATCC AAGATTTTAT
TCAGCGCAGT TAAGAAGAAA CGCGTTTCGT CTCGCTTTCT TACCTAAATT CGTGTCCATT CCCATACACC ACCCTTTTGC
TTTCTATAAA TTCACAACTC CCGTAATTCT TCCCCAATTT CAACCAAAAC CGACACAAAC GAAAGAATCT TCTAGATTTT
CATCATGGCT GCCGAAACCC AACCCCCACA AATTGTATGT TACATCCATC TTTTCATCCT TATTATTATT GTTCTATTTT
CCCTGTGTGA ATGATCTAGT GCTTTCAATT TAATTGATCA TCAGGGATCA GACTATTCTA CTTTACATCT GTTGTTTATC
TTGGGTTTGG ATTTTGATTG AATTTCCTGA ACGAGATGAT TTCATTTTCC ATGGGTTGTT TAATTTACTA TTTGAATTTT
ATGAGAGAAC TATATTCTTA GTGTGTTGTT TATTTTGTTT AGGGTTTGAA CTCGATTGAA TTCTGAGAAC CAGAGTATTA
TATTTTCCAT GCGTAGTTTA TCTATAGTTT AATTTGATTG AATTTTTAGG ACGAGAGTAT TATTCTAATT TTTTTGTTGT
TTGTATATGG TTCGAATTTG ATTGAATTTT AAAGATGAGA GGGTTCCATT TTCCTTGTGG TTTATTTAGG GTTTTGAATT
TGATTTAATC TTGCAGAATG AGATAAAAGA AGAGCAAGAA CTAAAGTACC TTGAATTCGT GCAATTCGCA ACTCTTGAGG
CTCTCATGCG TTGCGCCATC CTCTACTCGT ACGCGAAGGA ACGCGCCGGC CCTCTGAAGC CCGGCGTTAA CACCGTGGAG
GAGGCCGTTA AGACCGTGGT GGCTCCGGTG TACGACAGAT TCCACCTTGT CCCAGTCGAG CTCCTCAAAT ACGCTGATCG
CAAGGTCGGG GAGTTGGACC GCCACGTTCC CTCCAACGTG AAGAAGGTCT CCTCACAGGC CCGTTCCGTT GTCTCCGATG
TCCGCCGCGA CGGTGTCTCC ACCTTTGCGA AGACCGTTTA TTCAAAGTAT GAGCCCACGG CGGAGCAGTG CGCCGTGTCC
GCGTGGCGGA AACTTAATCA GCTTCCGCTC TTCCCTCAGG TGGCCAACGC CGTGTTGCCT AAGGCTGCTT ACTGTACGGA
GAAGTACAAC GAGGTTATTG TTTCCTCGGC TGAGAAAGGT TATAGGGTTT CAGCTTATCT TCCTTTGGTG CCCACAGAAA
AGATCGCCAA AGTCTTCAAT GGAAATTAAT CTTTGTTTGT TTTTTGTTTT TTACAAAGTT GTTGCTCTTG TCAGTCTTTT
TATTGGATAT TATTTGGTAT TGTGAATGAT CTGCTTTGTT TTTTTCTTTT ATAAAATAAG GTGATATAAA ATAATTGTTT
CAGTTTTATT CTAAACGGGC ATTTTCATTT TTGTATGGTT TGAACACAGG TGTGTTCGGG AAAGAATTTG AATTGGAAAA
GAG

>Vigan.05G041100.01
TGAAAGGAAT ATTCTAGATT CTACAGTGTT TTGAAACTTA ACCTGTAAGA AACAGTATTA TAGAAAATCC AAGATTTTAT
TCAGCGCAGT TAAGAAGAAA CGCGTTTCGT CTCGCTTTCT TACCTAAATT CGTGTCCATT CCCATACACC ACCCTTTTGC
TTTCTATAAA TTCACAACTC CCGTAATTCT TCCCCAATTT CAACCAAAAC CGACACAAAC GAAAGAATCT TCTAGATTTT
CATCATGGCT GCCGAAACCC AACCCCCACA AATTAATGAG ATAAAAGAAG AGCAAGAACT AAAGTACCTT GAATTCGTGC
AATTCGCAAC TCTTGAGGCT CTCATGCGTT GCGCCATCCT CTACTCGTAC GCGAAGGAAC GCGCCGGCCC TCTGAAGCCC
GGCGTTAACA CCGTGGAGGA GGCCGTTAAG ACCGTGGTGG CTCCGGTGTA CGACAGATTC CACCTTGTCC CAGTCGAGCT
CCTCAAATAC GCTGATCGCA AGGTCGGGGA GTTGGACCGC CACGTTCCCT CCAACGTGAA GAAGGTCTCC TCACAGGCCC
GTTCCGTTGT CTCCGATGTC CGCCGCGACG GTGTCTCCAC CTTTGCGAAG ACCGTTTATT CAAAGTATGA GCCCACGGCG
GAGCAGTGCG CCGTGTCCGC GTGGCGGAAA CTTAATCAGC TTCCGCTCTT CCCTCAGGTG GCCAACGCCG TGTTGCCTAA
GGCTGCTTAC TGTACGGAGA AGTACAACGA GGTTATTGTT TCCTCGGCTG AGAAAGGTTA TAGGGTTTCA GCTTATCTTC
CTTTGGTGCC CACAGAAAAG ATCGCCAAAG TCTTCAATGG AAATTAATCT TTGTTTGTTT TTTGTTTTTT ACAAAGTTGT
TGCTCTTGTC AGTCTTTTTA TTGGATATTA TTTGGTATTG TGAATGATCT GCTTTGTTTT TTTCTTTTAT AAAATAAGGT
GATATAAAAT AATTGTTTCA GTTTTATTCT AAACGGGCAT TTTCATTTTT GTATGGTTTG AACACAGGTG TGTTCGGGAA
AGAATTTGAA TTGGAAAAGA G

>Vigan.05G041100.01
ATGGCTGCCG AAACCCAACC CCCACAAATT AATGAGATAA AAGAAGAGCA AGAACTAAAG TACCTTGAAT TCGTGCAATT
CGCAACTCTT GAGGCTCTCA TGCGTTGCGC CATCCTCTAC TCGTACGCGA AGGAACGCGC CGGCCCTCTG AAGCCCGGCG
TTAACACCGT GGAGGAGGCC GTTAAGACCG TGGTGGCTCC GGTGTACGAC AGATTCCACC TTGTCCCAGT CGAGCTCCTC
AAATACGCTG ATCGCAAGGT CGGGGAGTTG GACCGCCACG TTCCCTCCAA CGTGAAGAAG GTCTCCTCAC AGGCCCGTTC
CGTTGTCTCC GATGTCCGCC GCGACGGTGT CTCCACCTTT GCGAAGACCG TTTATTCAAA GTATGAGCCC ACGGCGGAGC
AGTGCGCCGT GTCCGCGTGG CGGAAACTTA ATCAGCTTCC GCTCTTCCCT CAGGTGGCCA ACGCCGTGTT GCCTAAGGCT
GCTTACTGTA CGGAGAAGTA CAACGAGGTT ATTGTTTCCT CGGCTGAGAA AGGTTATAGG GTTTCAGCTT ATCTTCCTTT
GGTGCCCACA GAAAAGATCG CCAAAGTCTT CAATGGAAAT TAA

>Vigan.05G041100.01
MAAETQPPQI NEIKEEQELK YLEFVQFATL EALMRCAILY SYAKERAGPL KPGVNTVEEA VKTVVAPVYD RFHLVPVELL
KYADRKVGEL DRHVPSNVKK VSSQARSVVS DVRRDGVSTF AKTVYSKYEP TAEQCAVSAW RKLNQLPLFP QVANAVLPKA
AYCTEKYNEV IVSSAEKGYR VSAYLPLVPT EKIAKVFNGN *