GBrowse Details

Vigan.05G041100.01

Basic Information:
Name: Vigan.05G041100.01
Multiple alignment
Variant Information
Position: Chr05:2768346..2769868 (+ strand)
Length: 1523
Functional Information:
Description: Similar to Uncharacterized protein. [I1M253, Glycine max]
InterPro: Rubber elongation factor (IPR008802)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:147.50,86.49,178.12,82.25,122.16,141.49,34.48,59.45
Arabidopsis thaliana homolog: AT3G05500.1
Automatic updates:
Name: NM_001363754 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max metal response element-binding transcription factor PvMTF-1-like (LOC100808646), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:2768346..2768589 (+ strand)
Length: 244
Type: five_prime_UTR
Position: Chr05:2768590..2768619 (+ strand)
Length: 30
Type: CDS
Position: Chr05:2769082..2769654 (+ strand)
Length: 573
Type: CDS
Position: Chr05:2769655..2769868 (+ strand)
Length: 214
Type: three_prime_UTR


>Vigan.05G041100.01
TGAAAGGAAT ATTCTAGATT CTACAGTGTT TTGAAACTTA ACCTGTAAGA AACAGTATTA TAGAAAATCC AAGATTTTAT
TCAGCGCAGT TAAGAAGAAA CGCGTTTCGT CTCGCTTTCT TACCTAAATT CGTGTCCATT CCCATACACC ACCCTTTTGC
TTTCTATAAA TTCACAACTC CCGTAATTCT TCCCCAATTT CAACCAAAAC CGACACAAAC GAAAGAATCT TCTAGATTTT
CATCATGGCT GCCGAAACCC AACCCCCACA AATTAATGAG ATAAAAGAAG AGCAAGAACT AAAGTACCTT GAATTCGTGC
AATTCGCAAC TCTTGAGGCT CTCATGCGTT GCGCCATCCT CTACTCGTAC GCGAAGGAAC GCGCCGGCCC TCTGAAGCCC
GGCGTTAACA CCGTGGAGGA GGCCGTTAAG ACCGTGGTGG CTCCGGTGTA CGACAGATTC CACCTTGTCC CAGTCGAGCT
CCTCAAATAC GCTGATCGCA AGGTCGGGGA GTTGGACCGC CACGTTCCCT CCAACGTGAA GAAGGTCTCC TCACAGGCCC
GTTCCGTTGT CTCCGATGTC CGCCGCGACG GTGTCTCCAC CTTTGCGAAG ACCGTTTATT CAAAGTATGA GCCCACGGCG
GAGCAGTGCG CCGTGTCCGC GTGGCGGAAA CTTAATCAGC TTCCGCTCTT CCCTCAGGTG GCCAACGCCG TGTTGCCTAA
GGCTGCTTAC TGTACGGAGA AGTACAACGA GGTTATTGTT TCCTCGGCTG AGAAAGGTTA TAGGGTTTCA GCTTATCTTC
CTTTGGTGCC CACAGAAAAG ATCGCCAAAG TCTTCAATGG AAATTAATCT TTGTTTGTTT TTTGTTTTTT ACAAAGTTGT
TGCTCTTGTC AGTCTTTTTA TTGGATATTA TTTGGTATTG TGAATGATCT GCTTTGTTTT TTTCTTTTAT AAAATAAGGT
GATATAAAAT AATTGTTTCA GTTTTATTCT AAACGGGCAT TTTCATTTTT GTATGGTTTG AACACAGGTG TGTTCGGGAA
AGAATTTGAA TTGGAAAAGA G

>Vigan.05G041100.01
ATGGCTGCCG AAACCCAACC CCCACAAATT AATGAGATAA AAGAAGAGCA AGAACTAAAG TACCTTGAAT TCGTGCAATT
CGCAACTCTT GAGGCTCTCA TGCGTTGCGC CATCCTCTAC TCGTACGCGA AGGAACGCGC CGGCCCTCTG AAGCCCGGCG
TTAACACCGT GGAGGAGGCC GTTAAGACCG TGGTGGCTCC GGTGTACGAC AGATTCCACC TTGTCCCAGT CGAGCTCCTC
AAATACGCTG ATCGCAAGGT CGGGGAGTTG GACCGCCACG TTCCCTCCAA CGTGAAGAAG GTCTCCTCAC AGGCCCGTTC
CGTTGTCTCC GATGTCCGCC GCGACGGTGT CTCCACCTTT GCGAAGACCG TTTATTCAAA GTATGAGCCC ACGGCGGAGC
AGTGCGCCGT GTCCGCGTGG CGGAAACTTA ATCAGCTTCC GCTCTTCCCT CAGGTGGCCA ACGCCGTGTT GCCTAAGGCT
GCTTACTGTA CGGAGAAGTA CAACGAGGTT ATTGTTTCCT CGGCTGAGAA AGGTTATAGG GTTTCAGCTT ATCTTCCTTT
GGTGCCCACA GAAAAGATCG CCAAAGTCTT CAATGGAAAT TAA

>Vigan.05G041100.01
MAAETQPPQI NEIKEEQELK YLEFVQFATL EALMRCAILY SYAKERAGPL KPGVNTVEEA VKTVVAPVYD RFHLVPVELL
KYADRKVGEL DRHVPSNVKK VSSQARSVVS DVRRDGVSTF AKTVYSKYEP TAEQCAVSAW RKLNQLPLFP QVANAVLPKA
AYCTEKYNEV IVSSAEKGYR VSAYLPLVPT EKIAKVFNGN *