GBrowse Details

Vigan.05G045600.01

Basic Information:
Name: Vigan.05G045600.01
Multiple alignment
Variant Information
Position: Chr05:3206561..3209596 (+ strand)
Length: 3036
Functional Information:
Description: Similar to Uncharacterized protein. [I1MEN0, Glycine max]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: unfolded protein binding (GO:0051082)
InterPro: DnaJ domain (IPR001623)
Chaperone DnaJ, C-terminal (IPR002939)
HSP40/DnaJ peptide-binding (IPR008971)
DnaJ domain, conserved site (IPR018253)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.13,15.80,14.73,10.75,15.93,29.80,34.46,12.00
Automatic updates:
Name: NM_001255044 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max dnaJ homolog subfamily B member 4-like (LOC100794650), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:3206561..3206734 (+ strand)
Length: 174
Type: five_prime_UTR
Position: Chr05:3206735..3206893 (+ strand)
Length: 159
Type: CDS
Position: Chr05:3207546..3207994 (+ strand)
Length: 449
Type: CDS
Position: Chr05:3208787..3209195 (+ strand)
Length: 409
Type: CDS
Position: Chr05:3209196..3209596 (+ strand)
Length: 401
Type: three_prime_UTR


>Vigan.05G045600.01
AAAATAGAAA CAAACAACCA TTTTTAAACA GAGTTGACAT ATATTGATAT ATTGATCAAA AGTCAAAAAA ACAAACATTT
GTTACACAAT CTCAAAAAAA TTTCACCAGA ATTGTTGTTG ATCATAAGAT ACTTTGTGAA GAAAGAGAAA AGTGAAAAAG
AGGGAGTGAA TCGGATGGAC TACTATGGGA TTTTGGAAGT TGACAAGAAT GCCTCAGATG AAGAATTGAA GAAAGCCTAC
AGAAAGCTTG CAATGAAATG GCACCCTGAT AAGAACCCAA CCAATAAAAA GGAGGCTGAG ATTAGATTCA AACAGATATC
TGAAGCCTAC GAGGTTCTGA GTGATCCTCA GAAGAGAGAA ATTTATGATA GGTATGGAGA AGGTGGGCTT AAAGGTGGAA
TACCAACACG GGATGAAGGT ATGGCTTCCT TCTTCCGAAC TGGGGATGGC CCACAACCAT TTAGGTTCAA TCCCAGAAAT
GCAAACAACA TTTTTGCAGA AGTGTTTGGG AGTTCAACCC CATTTGGAGG AATGGGAATG GGAAGGGGGT TTGAGTGTGG
TAGCAGAGGC AGAGGCATGG GCATGAGGGG GGGATCGTGG GTATCAAGAT CCTTTGGTGG AATGTTTGGC AATGACATCT
TCAGAGAAGG CAGGCCAATG AATGAAGCTC CACGCCGCAA GGCTCCTCCT ATCCAAAATA CACTGTTTTG CAGCCTTGAG
GAACTCTACA AGGGCAGTAC CAGAAAGATG AAAATATCAA GGGAAGTTGC ACTTGCAAGC GGGAGAGTTT TTCCTGTGGA
GGAAATATTG AACATTGAAA TCCAACCGGG ATGGAAGAAG GGAACCAAAA TCACTTTCCC AGAGAAAGGA AATGAGCAGC
CAAATGTCAT TGCAGCTGAT CTTGTGTTTA TAATTGATGA GAAACCTCAC GGTATATTTA CAAGAGTTGG TAATGATTTG
GTTGTGACAA AAAAGATATC TCTTACGGAA GCTGAAGCTC TACCAGGTTA CACCATCCAA CTTACAACTC TTGATGGCAG
GGATCTGAAC ATCGCCATAA ACAACGCCAC TGATCCAGAT TACGAAGAAG TCGTCACCGG GGAAGGCATG CCAATTGCGA
AAGATCCTTC AAAGAGGGGT AACCTTAGGA TCAAATTCAA CATCGAAATC CCAGATGTAG TCGGTGCCTG AGTGGAAAGC
CAGAATTAAG AAACTTTTGG CACCATGAGT GCCAACTGTG GCAGAGAGTA TCTAGTATAT AATAATAGTA GTCTTTGGTA
TTCACATTTT TTTTCCTTCT TCATTTAGAT GGTATGTGAC TGGTGAAGTT TCTGAGTTGC GTTAACAATG TCATCCACGT
AAGTATAATA TTTTTTAAAT TATGGGTAAC AGAGTAATTC AACTGTGTGG CATCATCAAT GCCTGTTAAA TTAATTCTAA
AGAGCAGTAA TTCGAAAAAT CATTAAGAAA TAAGGTGTAT TAAACACCAC AGGGTTAAGT ACCTGCTCAA ATGGTTGATA
TACTTTAGAT TTGATTTTTA ATTTCTTCGT ATTTCGGAGT AAATAATAAT TTCAGTTCAA AATAGTCCAA AC

>Vigan.05G045600.01
ATGGACTACT ATGGGATTTT GGAAGTTGAC AAGAATGCCT CAGATGAAGA ATTGAAGAAA GCCTACAGAA AGCTTGCAAT
GAAATGGCAC CCTGATAAGA ACCCAACCAA TAAAAAGGAG GCTGAGATTA GATTCAAACA GATATCTGAA GCCTACGAGG
TTCTGAGTGA TCCTCAGAAG AGAGAAATTT ATGATAGGTA TGGAGAAGGT GGGCTTAAAG GTGGAATACC AACACGGGAT
GAAGGTATGG CTTCCTTCTT CCGAACTGGG GATGGCCCAC AACCATTTAG GTTCAATCCC AGAAATGCAA ACAACATTTT
TGCAGAAGTG TTTGGGAGTT CAACCCCATT TGGAGGAATG GGAATGGGAA GGGGGTTTGA GTGTGGTAGC AGAGGCAGAG
GCATGGGCAT GAGGGGGGGA TCGTGGGTAT CAAGATCCTT TGGTGGAATG TTTGGCAATG ACATCTTCAG AGAAGGCAGG
CCAATGAATG AAGCTCCACG CCGCAAGGCT CCTCCTATCC AAAATACACT GTTTTGCAGC CTTGAGGAAC TCTACAAGGG
CAGTACCAGA AAGATGAAAA TATCAAGGGA AGTTGCACTT GCAAGCGGGA GAGTTTTTCC TGTGGAGGAA ATATTGAACA
TTGAAATCCA ACCGGGATGG AAGAAGGGAA CCAAAATCAC TTTCCCAGAG AAAGGAAATG AGCAGCCAAA TGTCATTGCA
GCTGATCTTG TGTTTATAAT TGATGAGAAA CCTCACGGTA TATTTACAAG AGTTGGTAAT GATTTGGTTG TGACAAAAAA
GATATCTCTT ACGGAAGCTG AAGCTCTACC AGGTTACACC ATCCAACTTA CAACTCTTGA TGGCAGGGAT CTGAACATCG
CCATAAACAA CGCCACTGAT CCAGATTACG AAGAAGTCGT CACCGGGGAA GGCATGCCAA TTGCGAAAGA TCCTTCAAAG
AGGGGTAACC TTAGGATCAA ATTCAACATC GAAATCCCAG ATGTAGTCGG TGCCTGA

>Vigan.05G045600.01
MDYYGILEVD KNASDEELKK AYRKLAMKWH PDKNPTNKKE AEIRFKQISE AYEVLSDPQK REIYDRYGEG GLKGGIPTRD
EGMASFFRTG DGPQPFRFNP RNANNIFAEV FGSSTPFGGM GMGRGFECGS RGRGMGMRGG SWVSRSFGGM FGNDIFREGR
PMNEAPRRKA PPIQNTLFCS LEELYKGSTR KMKISREVAL ASGRVFPVEE ILNIEIQPGW KKGTKITFPE KGNEQPNVIA
ADLVFIIDEK PHGIFTRVGN DLVVTKKISL TEAEALPGYT IQLTTLDGRD LNIAINNATD PDYEEVVTGE GMPIAKDPSK
RGNLRIKFNI EIPDVVGA*