GBrowse Details

Vigan.05G047500.01

Basic Information:
Name: Vigan.05G047500.01
Multiple alignment
Variant Information
Position: Chr05:3366644..3370238 (+ strand)
Length: 3595
Functional Information:
Description: Similar to Uncharacterized protein. [I1L9A4, Glycine max]
InterPro: Casein kinase substrate, phosphoprotein PP28 (IPR019380)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:251.47,119.63,97.43,145.07,121.17,56.24,87.25,82.31
Arabidopsis thaliana homolog: AT5G46020.1
Automatic updates:
Name: NM_001253325 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 28 kDa heat- and acid-stable phosphoprotein-like (LOC100782451), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:3366644..3366844 (+ strand)
Length: 201
Type: five_prime_UTR
Position: Chr05:3366845..3366911 (+ strand)
Length: 67
Type: CDS
Position: Chr05:3368074..3368111 (+ strand)
Length: 38
Type: CDS
Position: Chr05:3368309..3368389 (+ strand)
Length: 81
Type: CDS
Position: Chr05:3368520..3368603 (+ strand)
Length: 84
Type: CDS
Position: Chr05:3368689..3368723 (+ strand)
Length: 35
Type: CDS
Position: Chr05:3369526..3369611 (+ strand)
Length: 86
Type: CDS
Position: Chr05:3369868..3369933 (+ strand)
Length: 66
Type: CDS
Position: Chr05:3370023..3370057 (+ strand)
Length: 35
Type: CDS
Position: Chr05:3370058..3370238 (+ strand)
Length: 181
Type: three_prime_UTR


>Vigan.05G047500.01
GTTTAAATTC GTGTTTTTAA TATATATAAT ATCTTACATA ATTTATGTGG AGTTTAACTA GGGTTTTTGG AATTTGGAAT
AAAGGGGAAG AGAGTGCATC TTCCTTTTGT TGTTGTCAAA CTTTAATCTC ATAATATAGC AGAAGGAAGA AGAATTTGAT
TCGAAAATTG TAGCGTAGCG TGGGTGCAAT TGAACGATAA GATGGGAAGA GGAAAATACA AAAGCAAGCC CACCGGTCGC
CGCCAGTTCT CCACCCCGGA AGATCTCCTT GCTGGAACCT CTAACCGGCC TCGAACTTTT AAACAGAAAG AAGCTGAACA
CGTAGAGGAA GAATCTGAGG AAGCATCTGG GGATGAATCT GGAGAAGAAT CTGAAGAAGA ATCTTCGAAG AAAAAAGGAA
CTCAAGGGAT TATTGAGATT GAAAATCCTA ACTTGGTAAA GCCAAAGAGT GTGAAGGCCA GAGATGTTGA TGTTGGAAAA
ACAACAGAAC TTTCAAGGCG TGAAAGAGAG GAGCTGGAGA AACAGAGAGC CCATGAGCGC TACATGAGGC TGCAAGAGCA
AGGGAAAACA GAACAAGCAA AGAAAGATTT AGAACGTTTA GCTCTTATAC GTCAGCAAAG GGCAGAGGCT GCTAAAAAGA
GAGAAGAAGA GAAAGCTGCT AAAGAGCAGA AGAAGGCTGA AGCGCGAAAG TAGAGAATGT AATGAGGCCA ACTGTACTCC
AATTAGTAGG AGGAATATGT GCTCTTGCTA CACTTCAACA TTATGTCCAT TTACCTTTTT ATATTGTTAT TACCATACCA
ATCTGGTAAC ATGTAATGCA ATTATTTTCC TATTCTGTGG TTTAAAATCG TGATTATACA TATATAGACT TCTT

>Vigan.05G047500.01
ATGGGAAGAG GAAAATACAA AAGCAAGCCC ACCGGTCGCC GCCAGTTCTC CACCCCGGAA GATCTCCTTG CTGGAACCTC
TAACCGGCCT CGAACTTTTA AACAGAAAGA AGCTGAACAC GTAGAGGAAG AATCTGAGGA AGCATCTGGG GATGAATCTG
GAGAAGAATC TGAAGAAGAA TCTTCGAAGA AAAAAGGAAC TCAAGGGATT ATTGAGATTG AAAATCCTAA CTTGGTAAAG
CCAAAGAGTG TGAAGGCCAG AGATGTTGAT GTTGGAAAAA CAACAGAACT TTCAAGGCGT GAAAGAGAGG AGCTGGAGAA
ACAGAGAGCC CATGAGCGCT ACATGAGGCT GCAAGAGCAA GGGAAAACAG AACAAGCAAA GAAAGATTTA GAACGTTTAG
CTCTTATACG TCAGCAAAGG GCAGAGGCTG CTAAAAAGAG AGAAGAAGAG AAAGCTGCTA AAGAGCAGAA GAAGGCTGAA
GCGCGAAAGT AG

>Vigan.05G047500.01
MGRGKYKSKP TGRRQFSTPE DLLAGTSNRP RTFKQKEAEH VEEESEEASG DESGEESEEE SSKKKGTQGI IEIENPNLVK
PKSVKARDVD VGKTTELSRR EREELEKQRA HERYMRLQEQ GKTEQAKKDL ERLALIRQQR AEAAKKREEE KAAKEQKKAE
ARK*