VIGGS:GBrowse

Vigan.05G049700.01

Basic Information:

Name:	Vigan.05G049700.01 Multiple alignment Variant Information
Position:	Chr05:3524004..3526828 (- strand)
Length:	2825

Functional Information:

Description:	Similar to Magnesium-chelatase subunit ChlI, chloroplastic. [P93162, Glycine max]
GO:	Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779)
	Biological Process: photosynthesis (GO:0015979)
	Biological Process: chlorophyll biosynthetic process (GO:0015995)
	Molecular Function: nucleotide binding (GO:0000166)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: magnesium chelatase activity (GO:0016851)
	Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
InterPro:	Magnesium chelatase, ChlI subunit (IPR000523)
	AAA+ ATPase domain (IPR003593)
	Magnesium chelatase, ATPase subunit I (IPR011775)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:8.39,4.28,51.91,180.12,2.80,50.31,5.96,30.66
Arabidopsis thaliana homolog:	AT4G18480.1, AT5G45930.1

Automatic updates:

Name:	NM_001360322 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max Mg-protoporphyrin IX chelatase subunit ChlI (CHLI), mRNA; nuclear gene for chloroplast product.
PubMed ID:	29971071 NCBI(pubmed)
PubMed ID:	7575622 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:3524004..3524248 (- strand)
Length:	245
Type:	three_prime_UTR

Position:	Chr05:3524249..3525301 (- strand)
Length:	1053
Type:	CDS

Position:	Chr05:3525934..3526043 (- strand)
Length:	110
Type:	CDS

Position:	Chr05:3526234..3526339 (- strand)
Length:	106
Type:	CDS

Position:	Chr05:3526340..3526828 (- strand)
Length:	489
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G049700.01
AAAAAAACAT TTTAAAAAAT AATATAATAA CTTGCAAAAG AAAGTTTTAA AATAATGTAA AAAATAACTA CCATGATAGG
ATTTCAAAGT AAAATAAAAC CTTTGTCTTA AAGTAAATAA TTTACCGCAA TATTCGTATC AGAGTCTATT TACTATTAAC
AAAAATACAC ATAACCATTT AATTTAAAAG CATGGTTTGG AATTGATCTG GTTATTTTGG GCCTTAATAA AAATGTAATG
TAGGAGTACG TGGTCTTTTA AAAAATTTTG TAAACTTGGA GGAATTATTA ATTTAATTGA GTTATTTTTG TTTTAATTAA
AAGAAGAAGA AGAAGAAGAG AGAGAAAAGA ATGAAATCTA TCTATCTTCT TATCCAAAGG CTGGGAGGCC AATAGGAGGC
ATGCCATCTG CTATGATTGG TGAATAAAGG ACAAAACAAA CAAACAGCCT CATAGAGCAG AGCTTTTACA CTCCTTCTCT
TCTCCGCCTA TGGCGTCCAC GTTGGGCACT TCTTCAATTG CTCTTCTGCC TTCTCGCTAT TTCTCTTCTT CTTCTTCTTC
CAAGCCTTCC GTTCACTCTC TCTCTCTAAC CTCAGGGCAG AGCTATGGGC GGAAGTTTTA TGGAGGAATT GGAATCCACG
GCATGAAGGG AAGGTCTCAG TTCTCAGTTG CCAGTGTTGC CACTGAAGTT AACTCTGTAG AACAGAATCA GAGTACTGCT
GCTAAAGAAA GCCAAAGACC AGTATACCCG TTTGCTGCCA TAGTTGGACA GGATGAGATG AAACTCTGTC TTCTCCTTAA
TGTGATTGAT CCTAAGATTG GAGGCGTGAT GATTATGGGG GACAGGGGAA CAGGGAAATC CACAACGGTT CGGTCATTGG
TTGATTTACT TCCCGAAATC AAGGTTGTTG CTGGTGACCC CTATAACTCA GACCCGGAAG ATCCAGAATT CATGGGTGTT
GAAGTGAGAG AGCGTGTACT ACAAGGAGAG GATCTTTCTG TGGTATTGAC GAAAATTAAC ATGGTTGATT TGCCATTGGG
AGCTACAGAA GATAGAGTGT GTGGAACAAT TGACATTGAG AAAGCTTTGA CTGAGGGTGT GAAGGCATTT GAGCCTGGAC
TACTGGCCAA AGCTAATAGG GGAATCCTAT ATGTTGATGA AGTTAACCTT TTGGATGATC ACTTGGTAGA TGTGTTGTTG
GATTCTGCTG CATCAGGATG GAACACAGTG GAGAGAGAGG GAATTTCTAT CTCACATCCT GCACGCTTTA TCCTAATTGG
CTCGGGCAAC CCTGAAGAAG GGGAGCTCCG GCCCCAGCTG TTGGATAGGT TTGGAATGCA TGCTCAAGTT GGAACTGTCA
GGGATGCTGA GCTGAGAGTT AAGATTGTGG AGGAGAGAGG TCGATTTGAC AAGAGCCCAA AGGAGTTTCG TGATTCGTAC
AAAGCAGAGC AAGAGAAGCT CCAGGACCAA ATATCCTCAG CAAGGAGTGT TCTTTCTTCT GTTCAAATTG ATCAAGATCT
CAAGGTAAAA ATCTCCAAGG TGTGTGCAGA GTTGAATGTG GATGGACTAA GAGGAGACAT CGTAACAAAC AGGGCTGCAA
AAGCTCTTGC TGCACTGAAG GGAAGAGACA CAGTAAGTGC AGAGGATATT GCTACTGTTA TTCCCAACTG CTTGAGACAC
CGTCTTAGAA AGGATCCCTT GGAGTCAATA GACTCAGGTT TACTTGTCAC TGAGAAATTT TACGAGGTTT TCAGCTGAGA
GGCATAGTTA TAACACGGTC TTTATGCTGC GGTATTCAGC GACTGTTTAC ATTTTACATT TCCTTTCCTG AGAGGATTTT
CATTGTCCTT AAACATTAGT AAGATTCATG AATTCCTCTT ATACAGGAAA ATCCGAGTTT ATTAAGTGTA AGAGTCATTC
ACTATTTTTC TACTGTATTT GTAGTCCTTT AACAAGCTAG GGGTTTCCAG ACTGTGATTC CTATATTAGA ATAAATTTGA
AAA

[show][hide][copy]CDS

>Vigan.05G049700.01
ATGGCGTCCA CGTTGGGCAC TTCTTCAATT GCTCTTCTGC CTTCTCGCTA TTTCTCTTCT TCTTCTTCTT CCAAGCCTTC
CGTTCACTCT CTCTCTCTAA CCTCAGGGCA GAGCTATGGG CGGAAGTTTT ATGGAGGAAT TGGAATCCAC GGCATGAAGG
GAAGGTCTCA GTTCTCAGTT GCCAGTGTTG CCACTGAAGT TAACTCTGTA GAACAGAATC AGAGTACTGC TGCTAAAGAA
AGCCAAAGAC CAGTATACCC GTTTGCTGCC ATAGTTGGAC AGGATGAGAT GAAACTCTGT CTTCTCCTTA ATGTGATTGA
TCCTAAGATT GGAGGCGTGA TGATTATGGG GGACAGGGGA ACAGGGAAAT CCACAACGGT TCGGTCATTG GTTGATTTAC
TTCCCGAAAT CAAGGTTGTT GCTGGTGACC CCTATAACTC AGACCCGGAA GATCCAGAAT TCATGGGTGT TGAAGTGAGA
GAGCGTGTAC TACAAGGAGA GGATCTTTCT GTGGTATTGA CGAAAATTAA CATGGTTGAT TTGCCATTGG GAGCTACAGA
AGATAGAGTG TGTGGAACAA TTGACATTGA GAAAGCTTTG ACTGAGGGTG TGAAGGCATT TGAGCCTGGA CTACTGGCCA
AAGCTAATAG GGGAATCCTA TATGTTGATG AAGTTAACCT TTTGGATGAT CACTTGGTAG ATGTGTTGTT GGATTCTGCT
GCATCAGGAT GGAACACAGT GGAGAGAGAG GGAATTTCTA TCTCACATCC TGCACGCTTT ATCCTAATTG GCTCGGGCAA
CCCTGAAGAA GGGGAGCTCC GGCCCCAGCT GTTGGATAGG TTTGGAATGC ATGCTCAAGT TGGAACTGTC AGGGATGCTG
AGCTGAGAGT TAAGATTGTG GAGGAGAGAG GTCGATTTGA CAAGAGCCCA AAGGAGTTTC GTGATTCGTA CAAAGCAGAG
CAAGAGAAGC TCCAGGACCA AATATCCTCA GCAAGGAGTG TTCTTTCTTC TGTTCAAATT GATCAAGATC TCAAGGTAAA
AATCTCCAAG GTGTGTGCAG AGTTGAATGT GGATGGACTA AGAGGAGACA TCGTAACAAA CAGGGCTGCA AAAGCTCTTG
CTGCACTGAA GGGAAGAGAC ACAGTAAGTG CAGAGGATAT TGCTACTGTT ATTCCCAACT GCTTGAGACA CCGTCTTAGA
AAGGATCCCT TGGAGTCAAT AGACTCAGGT TTACTTGTCA CTGAGAAATT TTACGAGGTT TTCAGCTGA

[show][hide][copy]PROTEIN

>Vigan.05G049700.01
MASTLGTSSI ALLPSRYFSS SSSSKPSVHS LSLTSGQSYG RKFYGGIGIH GMKGRSQFSV ASVATEVNSV EQNQSTAAKE
SQRPVYPFAA IVGQDEMKLC LLLNVIDPKI GGVMIMGDRG TGKSTTVRSL VDLLPEIKVV AGDPYNSDPE DPEFMGVEVR
ERVLQGEDLS VVLTKINMVD LPLGATEDRV CGTIDIEKAL TEGVKAFEPG LLAKANRGIL YVDEVNLLDD HLVDVLLDSA
ASGWNTVERE GISISHPARF ILIGSGNPEE GELRPQLLDR FGMHAQVGTV RDAELRVKIV EERGRFDKSP KEFRDSYKAE
QEKLQDQISS ARSVLSSVQI DQDLKVKISK VCAELNVDGL RGDIVTNRAA KALAALKGRD TVSAEDIATV IPNCLRHRLR
KDPLESIDSG LLVTEKFYEV FS*