VIGGS:GBrowse

Vigan.05G050100.01

Basic Information:

Name:	Vigan.05G050100.01 Multiple alignment Variant Information
Position:	Chr05:3542535..3545889 (+ strand)
Length:	3355

Functional Information:

Description:	Similar to Uncharacterized protein. [I1M1W3, Glycine max]
GO:	Biological Process: mRNA processing (GO:0006397)
GO:	Cellular Component: THO complex part of transcription export complex (GO:0000445)
InterPro:	THO complex subunit 7/Mft1 (IPR008501)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:43.72,29.64,12.15,11.46,14.81,12.84,9.79,9.25
Arabidopsis thaliana homolog:	AT5G16790.1

Structure :

[show][hide]Parts:

Position:	Chr05:3542535..3542793 (+ strand)
Length:	259
Type:	five_prime_UTR

Position:	Chr05:3542794..3543387 (+ strand)
Length:	594
Type:	CDS

Position:	Chr05:3545542..3545673 (+ strand)
Length:	132
Type:	CDS

Position:	Chr05:3545674..3545889 (+ strand)
Length:	216
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G050100.01
TTTCCTCCTT CTCCGCACAA GCAGCAGAAA ACTGCTCTTA CTATTCTCCG CGGCGAAGGC GAAGGCATCA GAACACCACC
GCGCACCCAA AAGGTTTATT CTAACCTTAG TACTCCTTTT GCTCCTTTCC TCATTTGTGC ATAAACAGAA CAAAACCTCA
TCAGCCAACA TTCATTTCAC GCTCAATTAT TTAATTTAAA TTTCTCTAAA TTCAGCTCAA TTCTAGCAAA TAATCGTTAT
ATTGATTTCA GGGATCGCTA TGCTGGGAAA GACGAGGAAG GTTTCGACGC GTGGCGAGGC CGTGGCAGCG AACTACGCGT
TTGGCCCTGC AGAAGATGAC GTAATCATCA AACACCGGCT TCTAACGCGC ACGACGACCA CCAGGGGCGA CCCTCCCTTG
AAGAAGCTTC AAAAGAAGTT CACCTCGTTT GTCTCCGAGG TTGATAAAGA CGACGACAAC TACAACGACT GCGAAAAACT
CGCCAGAGCC TTCTTGCAGG AGCTGACGAC CTTCGAGATT CCGCTTCTGA AGAGCAAGGC GATTGTGGAG GCCAACGTTA
GGGAGAAGGA GAATTTCAAC GAGTTGAAGG AAGAGATGAA TCGCCAGATC CTGCAGGCGC AGGCCGACAT TGAGGATCTG
AAAAAGCAGC TGGAGGAGAG CAAGGTCGAG AGGCGGCACA AAGAGGAGTG CGAGGCTATT AGGAAGTTGA TTGCGTTGCA
GCCACCCAGG TCGGAGACAA TGAAGGTTAT TTCGGAGTTG GAGAAGGAAA TTGCGGCGCT GGATACGGAG AACACGGCTG
GTTCCAGGTT GTTGGAGCTC AGGAAGAAGC AATTTGCATT GTTGTTACAT GTGGTGGATG AGTTGCAAAA CACAATTGAG
GAAGAGCAGA AGAGCCTAGT TGAGGAGATG AGAATGGCAA CCGAGGAGCT TAAGAATGGG CTGGAGGACA CAAGTGGGGC
GGAAGCAATG GCAATTGACC AGTAACTAAA TCGAACTTCA ATCTTCCTGT TGTAACATTT CTTACATTTC AGCCTTGATT
TTTGTACCCA CAGTCATTAG GAACCATATG TAAATGAAAA TGAAACATCA ATATTATTTT GCTTATGCTT AGACCTTAGT
AAATGCATTT TTTATATTAG AAAGAAAAAG TAATACTCAG TGCATTTTGT TTGGATTTTT CTATCAAAAT TTGTGTAGCC
A

[show][hide][copy]CDS

>Vigan.05G050100.01
ATGCTGGGAA AGACGAGGAA GGTTTCGACG CGTGGCGAGG CCGTGGCAGC GAACTACGCG TTTGGCCCTG CAGAAGATGA
CGTAATCATC AAACACCGGC TTCTAACGCG CACGACGACC ACCAGGGGCG ACCCTCCCTT GAAGAAGCTT CAAAAGAAGT
TCACCTCGTT TGTCTCCGAG GTTGATAAAG ACGACGACAA CTACAACGAC TGCGAAAAAC TCGCCAGAGC CTTCTTGCAG
GAGCTGACGA CCTTCGAGAT TCCGCTTCTG AAGAGCAAGG CGATTGTGGA GGCCAACGTT AGGGAGAAGG AGAATTTCAA
CGAGTTGAAG GAAGAGATGA ATCGCCAGAT CCTGCAGGCG CAGGCCGACA TTGAGGATCT GAAAAAGCAG CTGGAGGAGA
GCAAGGTCGA GAGGCGGCAC AAAGAGGAGT GCGAGGCTAT TAGGAAGTTG ATTGCGTTGC AGCCACCCAG GTCGGAGACA
ATGAAGGTTA TTTCGGAGTT GGAGAAGGAA ATTGCGGCGC TGGATACGGA GAACACGGCT GGTTCCAGGT TGTTGGAGCT
CAGGAAGAAG CAATTTGCAT TGTTGTTACA TGTGGTGGAT GAGTTGCAAA ACACAATTGA GGAAGAGCAG AAGAGCCTAG
TTGAGGAGAT GAGAATGGCA ACCGAGGAGC TTAAGAATGG GCTGGAGGAC ACAAGTGGGG CGGAAGCAAT GGCAATTGAC
CAGTAA

[show][hide][copy]PROTEIN

>Vigan.05G050100.01
MLGKTRKVST RGEAVAANYA FGPAEDDVII KHRLLTRTTT TRGDPPLKKL QKKFTSFVSE VDKDDDNYND CEKLARAFLQ
ELTTFEIPLL KSKAIVEANV REKENFNELK EEMNRQILQA QADIEDLKKQ LEESKVERRH KEECEAIRKL IALQPPRSET
MKVISELEKE IAALDTENTA GSRLLELRKK QFALLLHVVD ELQNTIEEEQ KSLVEEMRMA TEELKNGLED TSGAEAMAID
Q*