GBrowse Details

Vigan.05G058700.01

Basic Information:
Name: Vigan.05G058700.01
Multiple alignment
Variant Information
Position: Chr05:4207640..4210197 (+ strand)
Length: 2558
Functional Information:
Description: Similar to Uncharacterized protein. [I1MEW7, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Major intrinsic protein, conserved site (IPR022357)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:85.74,66.42,37.30,14.20,0.22,22.93,0.39,14.41
Automatic updates:
Name: NM_001255076 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aquaporin NIP1-8 (NIP1-8), mRNA.
PubMed ID: 30634702 NCBI(pubmed)
23771580 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:4207640..4207872 (+ strand)
Length: 233
Type: five_prime_UTR
Position: Chr05:4207873..4207998 (+ strand)
Length: 126
Type: CDS
Position: Chr05:4208337..4208561 (+ strand)
Length: 225
Type: CDS
Position: Chr05:4209057..4209254 (+ strand)
Length: 198
Type: CDS
Position: Chr05:4209574..4209635 (+ strand)
Length: 62
Type: CDS
Position: Chr05:4209728..4209938 (+ strand)
Length: 211
Type: CDS
Position: Chr05:4209939..4210197 (+ strand)
Length: 259
Type: three_prime_UTR


>Vigan.05G058700.01
AATCAGAATT TTAAAAGACG TATGTACCGA GGAAATACAT TAAAAGTGGT TGTTTTGGTC AAACCTCTCG TGGAAAAAAT
GGTATAAGTT TAGTCTTTGA ATCCCAGGCT TTTTGGTGCC CATAAATTGG AGTTGGCTGC TTCTCTTCTC CATCACTTTT
TGGCCTATGA GGCAAAGCTA GTTTATCACC AATACACCCT TTTCGTTCTT TCTCTTAGCT TTATCCAAAG ACCATGTCGG
TGGTGGCTGA TAATTCCGCA AACGGTGGAA ACCACCAGGT TGTTTTAAAT GTGAACGGCG AAACCCCCAA AAAGTGTGAT
CCCTCGACCA ACCAAGACTG TGTTCCTCTC TTGCAGAAGT TGGTGGCAGA GGTGGTGGGA ACGTACTTTT TGATATTTGC
AGGGTGTGCT TCGGTGGTGG TGAACCTTGA CAAGGACAGA GTGATAACAC AACCAGGGAT TTCAATTGTT TGGGGACTCA
CTGTTATGGT TTTGGTTTAC TCTGTTGGTC ATATATCTGG TGCTCATTTC AACCCTGCTG TAACCATTGC TCATGCTTCC
ACCAGAAGGT TCCCACTGAA GCAGGTACCG GCTTATGTGA TAGCTCAGGT GGTTGGATCC ACACTTGCCA GCGGAACTCT
GAGACTTCTA TTCAATGGCA AGAATGACCA TTTCACAGGA ACACTCCCCG CTGGTTCTGA CTTACAATCT TTTGTGATCG
AATTCATAAT CACTTTTTAT CTCATGTTTG TCATTTCTGG AGTTGCCACC GATAACAGAG CGATTGGTGA GTTGGCAGGG
CTTGCAGTTG GATCGACGGT ACTGCTAAAT GTGATGTTTG CCGGGCCAAT CACAGGGGCA TCGATGAATC CAGCAAGAAG
CTTAGGGCCA GCAATTGTGC ACAATGAGTA CAGAGGAATA TGGATATATC TGGTGTCAAC AACTCTTGGA GCTGTGGCGG
GTGCATGGGC CTACAATTTC ATCAGATACA CTAACAAGCC AGTGCGTGAA ATCACCCAGA GTGCCTCTTT CCTCAAAGGT
GATCAAGCCG ACTGATTCAA CACCAAATGC AAGCATTTTC CCCGGGATTA GGGTTAAAAT GCGAGGAAGA ATCACTGATT
TAGTGCCAAA TAATTCTGTA ATATACCTAG AGGATATCAA AAGATTCTGC TTGTCTACGC ATCCACCAAT AGTCATATTT
TTGGATAAAT CTTGCAACAT ATGTTTTACG ATAATCTATA GTTAGAAGAC AACAAATCGT GACACACAAG ATTAGCGGGA
GATAAGGGAA AAATTAATAA ATAATAAAAA AAAT

>Vigan.05G058700.01
ATGTCGGTGG TGGCTGATAA TTCCGCAAAC GGTGGAAACC ACCAGGTTGT TTTAAATGTG AACGGCGAAA CCCCCAAAAA
GTGTGATCCC TCGACCAACC AAGACTGTGT TCCTCTCTTG CAGAAGTTGG TGGCAGAGGT GGTGGGAACG TACTTTTTGA
TATTTGCAGG GTGTGCTTCG GTGGTGGTGA ACCTTGACAA GGACAGAGTG ATAACACAAC CAGGGATTTC AATTGTTTGG
GGACTCACTG TTATGGTTTT GGTTTACTCT GTTGGTCATA TATCTGGTGC TCATTTCAAC CCTGCTGTAA CCATTGCTCA
TGCTTCCACC AGAAGGTTCC CACTGAAGCA GGTACCGGCT TATGTGATAG CTCAGGTGGT TGGATCCACA CTTGCCAGCG
GAACTCTGAG ACTTCTATTC AATGGCAAGA ATGACCATTT CACAGGAACA CTCCCCGCTG GTTCTGACTT ACAATCTTTT
GTGATCGAAT TCATAATCAC TTTTTATCTC ATGTTTGTCA TTTCTGGAGT TGCCACCGAT AACAGAGCGA TTGGTGAGTT
GGCAGGGCTT GCAGTTGGAT CGACGGTACT GCTAAATGTG ATGTTTGCCG GGCCAATCAC AGGGGCATCG ATGAATCCAG
CAAGAAGCTT AGGGCCAGCA ATTGTGCACA ATGAGTACAG AGGAATATGG ATATATCTGG TGTCAACAAC TCTTGGAGCT
GTGGCGGGTG CATGGGCCTA CAATTTCATC AGATACACTA ACAAGCCAGT GCGTGAAATC ACCCAGAGTG CCTCTTTCCT
CAAAGGTGAT CAAGCCGACT GA

>Vigan.05G058700.01
MSVVADNSAN GGNHQVVLNV NGETPKKCDP STNQDCVPLL QKLVAEVVGT YFLIFAGCAS VVVNLDKDRV ITQPGISIVW
GLTVMVLVYS VGHISGAHFN PAVTIAHAST RRFPLKQVPA YVIAQVVGST LASGTLRLLF NGKNDHFTGT LPAGSDLQSF
VIEFIITFYL MFVISGVATD NRAIGELAGL AVGSTVLLNV MFAGPITGAS MNPARSLGPA IVHNEYRGIW IYLVSTTLGA
VAGAWAYNFI RYTNKPVREI TQSASFLKGD QAD*