GBrowse Details

Vigan.05G062500.01

Basic Information:
Name: Vigan.05G062500.01
Multiple alignment
Variant Information
Position: Chr05:4503930..4506191 (- strand)
Length: 2262
Functional Information:
Description: Similar to Uncharacterized protein. [I1MEZ2, Glycine max]
GO: Biological Process: translational initiation (GO:0006413)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: translation initiation factor activity (GO:0003743)
InterPro: Translation Initiation factor eIF- 4e (IPR001040)
Eukaryotic translation initiation factor 4E (eIF-4E), conserved site (IPR019770)
Translation Initiation factor eIF- 4e-like domain (IPR023398)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:168.05,128.87,66.78,50.40,114.98,76.64,41.20,44.54
Arabidopsis thaliana homolog: AT4G18040.1
Automatic updates:
Name: NM_001250599 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 4E (LOC100499636), mRNA.
PubMed ID: -
Status: Known Variant
Name: PP894813 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris cultivar Imuna eukaryotic translation initiation factor 4E (eIF4E) mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Name: PP894814 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris cultivar Aluyori eukaryotic translation initiation factor 4E (eIF4E) mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Name: PP894815 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris cultivar Pinto UI-114 eukaryotic translation initiation factor 4E (eIF4E) mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Name: PP894816 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris cultivar XRAV-178-3 eukaryotic translation initiation factor 4E (eIF4E) mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:4503930..4504268 (- strand)
Length: 339
Type: three_prime_UTR
Position: Chr05:4504269..4504319 (- strand)
Length: 51
Type: CDS
Position: Chr05:4504414..4504479 (- strand)
Length: 66
Type: CDS
Position: Chr05:4504874..4504999 (- strand)
Length: 126
Type: CDS
Position: Chr05:4505537..4505702 (- strand)
Length: 166
Type: CDS
Position: Chr05:4505813..4506096 (- strand)
Length: 284
Type: CDS
Position: Chr05:4506097..4506191 (- strand)
Length: 95
Type: five_prime_UTR


>Vigan.05G062500.01
TAATCAGTGA CTCGAAACCG AATACACGCA TCTATTTGCA TCTCTTAGCA CAAAGAACAC AGAAGGAAAG AAAGGGAAAA
AGTGTGAACT TAAAAATGGT TGTGGAAGAT TCACAAAAAT CAACTATCAC CGATGACCAA AACCCTAGCA GGGTCGACAA
CGACGACGAC GATCTCGAAG ATGGGGAGAT CCTCGAAGAT GCCGACGACG CCGCCTCGGC TGCCTCCAAG CCTCCGTCCG
CACTCCTCCG CAACCCCCAC CCTCTCGAGA ATTCCTGGAC CTTCTGGTTC GACAGCCCTT CCGCCAAGTC CAAACAAGCC
GCATGGGGCA GTTCCATCCG ACCCATATAC ACCTTCGCCA CCGTCGAAGA GTTTTGGAGC ATTTACAATA ACATTCACCA
CCCGAGCAAG TTGGGTGTGG GGGCGGACTT TCACTGCTTC AAGTATAAGA TTGAGCCCAA ATGGGAGGAC CCTATCTGCG
CCAATGGTGG AAAATGGACC ATGACTTTCC AAAGGAACAA ATCTGATACC AGTTGGTTGT ATACGTTGTT GGCAATGATT
GGAGAACAGT TTGATCACGG AGATGAAATT TGTGGAGCTG TCGTGAATGT CAGAAATAGG CAGGATAAAA TTTCTATTTG
GACTAAGAAT GCTTCAAATG AAGCTGCTCA GATGAGCATT GGAAAGCAGT GGAAGGAGTT TCTTGATTAC AATGAGACAA
TAGGCTTTAT ATTTCATGAG GATGCAATGA AGCATGAGAG GAGTGCTAAA AATAAATATG TGATATGAAG TGTATAGCGT
ATTAAAAGGT GGGTGGCAAA TGAAGGATGC GGTACATTTC TTGCATGAAG AGTTGGCATT TAGATGCTCA GTCTTTCCTC
CTGCCTGTAG CTGAGCTGAA TTCTAAGCCC TTTTGGTCGG TCTCTTATAT CTTTGTAGTA CTTTCCTATT TGTTGTGCTC
GGAGAATATT TCCTACTGAA GATGTTTCAT CATCAATAAT ATAGTGATTA GGGTATAAAT GTACTACCAT TAGTTAGAAA
ATGGAACCAA ACTTGCATCC TTGGATTGAT ATGAAGATTC TCCTTCAAAT ACCGGAAAGT GCATATTGTG TTGATGGAAA
ACTTAAC

>Vigan.05G062500.01
ATGGTTGTGG AAGATTCACA AAAATCAACT ATCACCGATG ACCAAAACCC TAGCAGGGTC GACAACGACG ACGACGATCT
CGAAGATGGG GAGATCCTCG AAGATGCCGA CGACGCCGCC TCGGCTGCCT CCAAGCCTCC GTCCGCACTC CTCCGCAACC
CCCACCCTCT CGAGAATTCC TGGACCTTCT GGTTCGACAG CCCTTCCGCC AAGTCCAAAC AAGCCGCATG GGGCAGTTCC
ATCCGACCCA TATACACCTT CGCCACCGTC GAAGAGTTTT GGAGCATTTA CAATAACATT CACCACCCGA GCAAGTTGGG
TGTGGGGGCG GACTTTCACT GCTTCAAGTA TAAGATTGAG CCCAAATGGG AGGACCCTAT CTGCGCCAAT GGTGGAAAAT
GGACCATGAC TTTCCAAAGG AACAAATCTG ATACCAGTTG GTTGTATACG TTGTTGGCAA TGATTGGAGA ACAGTTTGAT
CACGGAGATG AAATTTGTGG AGCTGTCGTG AATGTCAGAA ATAGGCAGGA TAAAATTTCT ATTTGGACTA AGAATGCTTC
AAATGAAGCT GCTCAGATGA GCATTGGAAA GCAGTGGAAG GAGTTTCTTG ATTACAATGA GACAATAGGC TTTATATTTC
ATGAGGATGC AATGAAGCAT GAGAGGAGTG CTAAAAATAA ATATGTGATA TGA

>Vigan.05G062500.01
MVVEDSQKST ITDDQNPSRV DNDDDDLEDG EILEDADDAA SAASKPPSAL LRNPHPLENS WTFWFDSPSA KSKQAAWGSS
IRPIYTFATV EEFWSIYNNI HHPSKLGVGA DFHCFKYKIE PKWEDPICAN GGKWTMTFQR NKSDTSWLYT LLAMIGEQFD
HGDEICGAVV NVRNRQDKIS IWTKNASNEA AQMSIGKQWK EFLDYNETIG FIFHEDAMKH ERSAKNKYVI *