GBrowse Details

Vigan.05G062700.01

Basic Information:
Name: Vigan.05G062700.01
Multiple alignment
Variant Information
Position: Chr05:4516368..4521510 (- strand)
Length: 5143
Functional Information:
Description: Similar to PITH domain-containing protein 1-like isoform X2. [XP_004485971.1, Cicer arietinum]
InterPro: Galactose-binding domain-like (IPR008979)
PITH domain (IPR010400)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.85,9.03,15.53,11.81,27.28,25.63,10.27,14.94
Arabidopsis thaliana homolog: AT2G25950.1
Automatic updates:
Name: NM_001249916 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305543 (LOC100305543), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:4516368..4517055 (- strand)
Length: 688
Type: three_prime_UTR
Position: Chr05:4517056..4517098 (- strand)
Length: 43
Type: CDS
Position: Chr05:4517724..4517785 (- strand)
Length: 62
Type: CDS
Position: Chr05:4517858..4517966 (- strand)
Length: 109
Type: CDS
Position: Chr05:4518211..4518260 (- strand)
Length: 50
Type: CDS
Position: Chr05:4518342..4518399 (- strand)
Length: 58
Type: CDS
Position: Chr05:4519462..4519539 (- strand)
Length: 78
Type: CDS
Position: Chr05:4520999..4521048 (- strand)
Length: 50
Type: CDS
Position: Chr05:4521136..4521216 (- strand)
Length: 81
Type: CDS
Position: Chr05:4521340..4521423 (- strand)
Length: 84
Type: CDS
Position: Chr05:4521424..4521510 (- strand)
Length: 87
Type: five_prime_UTR


>Vigan.05G062700.01
GTCGTTTCAA AATGCCCGAG TTGGTATATA AGATAAATAA AAAAAAAAGA ATCAATCGGT TTCGGTTTGC ACGGGAAACA
AGTGAAGATG GCGTGCTTAC ACGATCACAG TTGTGAAGAA CATGACTGTT CCTCTAATTG GTCTCTCTAT CAGCACATAG
ATATCTCCAA GGTATTTGCT TTGAATGAGG CCACACCAGG TAGTGTTAAA TCAGTTTTTA AAGCTTGGGA AGATAGGCTG
AATACTTCTG GGGAACACTT GGAAAGCAAT GAGGGTGATC CTGAGTTACT TGTATTCATT CCGTTTACTT CAGATGTTAA
GATTAAGAGC ATATCCATAG TCGGTGGAGC TTATGGAACA AGTCCCTCCA AGATGAGAGT GTTCATCAAC CGAGAGGGCA
TTGACTTTTC AGATGCACAA AGCATGCAAG CCGTTCAGGA ATGGGATTTG GTTGAGAATA TGCAAGGAGT GTTGGAATAC
CAGACAAGAT ATTCTAAATT TCAAAGTGTG GCAAATATTA CATTGCACTT TCCTGAGAGT TTTGGAGGAG ACATAACGGA
AATACACTAC ATTGGCTTTA AAGGCGAAGC CACTCAGATG AAAAGGGATG CCGTTGCCAA TATTGTTTAT GAGCTGTTGC
CAAATCCTTC TGACCACAAG ACACATGCTG AAAGTGGCGG GGGTCTTTCA CACATAGAAT GAAACACATT TACTATTTCT
ATTTTGTTTA CTTAATAACC ATCGCAACCC AATCTTGTTC CCCTTGTTTC GATCCACCTA AGACAAGAAA GTACAGCTGG
ACCTGGTTAA ATACAATACT GTGCTATGAA ATATTTAGTC CTGCAGTCTA TGTAAATTAC ATATATACTG TTTATCTGGA
TGATGAATAC GACAATCTTA GATATTTTAT AGAACAACTG AAAAACTAAT CATTAGCAAT TGTTTCTCTC TGCAATTGGA
TGGATAAACC CTTTAGAAAA AGGCAATGAG AGGGTCGGCT ACGTTTTTTA GCTATGAAAT TGATGTTGAT GCACAAAGGT
TGAGATGCAA TTGACTTTGT AAAAGAAGCG AATCTAATTC AGTTCTACCT TCTAGCTAAG GAAAGTTGTA TGAGGTTATC
ATATAAATGG AGAAGAATAA TTCACTATCT TGACTGCAAT GCAAGAAAAG TGAGGAATCT TTTGAAGATA AGATTTCTTC
ACTGCTTGGC AGAAAAAGAA AAACTCTGAT AGGAAATATG TGGCCATTTT TTTCGTAGCC CAGTTTTTAG TAAATTAGTA
TTCAATCTTT GCATAAAATA AAAAAAGAGG TGTTGGAATA TATTTTTTTC AGCCCAAACA ATGGCCGTAT AATAAGTTAT
ATTAAAATGT GTGCATCATT AGGATTCTAT 

>Vigan.05G062700.01
ATGGCGTGCT TACACGATCA CAGTTGTGAA GAACATGACT GTTCCTCTAA TTGGTCTCTC TATCAGCACA TAGATATCTC
CAAGGTATTT GCTTTGAATG AGGCCACACC AGGTAGTGTT AAATCAGTTT TTAAAGCTTG GGAAGATAGG CTGAATACTT
CTGGGGAACA CTTGGAAAGC AATGAGGGTG ATCCTGAGTT ACTTGTATTC ATTCCGTTTA CTTCAGATGT TAAGATTAAG
AGCATATCCA TAGTCGGTGG AGCTTATGGA ACAAGTCCCT CCAAGATGAG AGTGTTCATC AACCGAGAGG GCATTGACTT
TTCAGATGCA CAAAGCATGC AAGCCGTTCA GGAATGGGAT TTGGTTGAGA ATATGCAAGG AGTGTTGGAA TACCAGACAA
GATATTCTAA ATTTCAAAGT GTGGCAAATA TTACATTGCA CTTTCCTGAG AGTTTTGGAG GAGACATAAC GGAAATACAC
TACATTGGCT TTAAAGGCGA AGCCACTCAG ATGAAAAGGG ATGCCGTTGC CAATATTGTT TATGAGCTGT TGCCAAATCC
TTCTGACCAC AAGACACATG CTGAAAGTGG CGGGGGTCTT TCACACATAG AATGA

>Vigan.05G062700.01
MACLHDHSCE EHDCSSNWSL YQHIDISKVF ALNEATPGSV KSVFKAWEDR LNTSGEHLES NEGDPELLVF IPFTSDVKIK
SISIVGGAYG TSPSKMRVFI NREGIDFSDA QSMQAVQEWD LVENMQGVLE YQTRYSKFQS VANITLHFPE SFGGDITEIH
YIGFKGEATQ MKRDAVANIV YELLPNPSDH KTHAESGGGL SHIE*