GBrowse Details

Vigan.05G073700.01

Basic Information:
Name: Vigan.05G073700.01
Multiple alignment
Variant Information
Position: Chr05:5450190..5457243 (+ strand)
Length: 7054
Functional Information:
Description: Similar to Pyrimidine-specific ribonucleoside hydrolase rihA. [G7IFM3, Medicago truncatula]
InterPro: Inosine/uridine-preferring nucleoside hydrolase domain (IPR001910)
Inosine/uridine-preferring nucleoside hydrolase (IPR023186)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.01,0.58,0.25,21.64,0.00,0.79,2.24
Arabidopsis thaliana homolog: AT5G18860.1, AT5G18890.1
Automatic updates:
Name: PP504867 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris cultivar Great Northern nucleoside hydrolase 3 (NSH3) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:5450190..5450499 (+ strand)
Length: 310
Type: five_prime_UTR
Position: Chr05:5450500..5450754 (+ strand)
Length: 255
Type: CDS
Position: Chr05:5451153..5451332 (+ strand)
Length: 180
Type: CDS
Position: Chr05:5451471..5451581 (+ strand)
Length: 111
Type: CDS
Position: Chr05:5451749..5452081 (+ strand)
Length: 333
Type: CDS
Position: Chr05:5452252..5452437 (+ strand)
Length: 186
Type: CDS
Position: Chr05:5452541..5452816 (+ strand)
Length: 276
Type: CDS
Position: Chr05:5452914..5453036 (+ strand)
Length: 123
Type: CDS
Position: Chr05:5453932..5454129 (+ strand)
Length: 198
Type: CDS
Position: Chr05:5454300..5454553 (+ strand)
Length: 254
Type: CDS
Position: Chr05:5454797..5454998 (+ strand)
Length: 202
Type: CDS
Position: Chr05:5455749..5456054 (+ strand)
Length: 306
Type: CDS
Position: Chr05:5456544..5456837 (+ strand)
Length: 294
Type: CDS
Position: Chr05:5456838..5457243 (+ strand)
Length: 406
Type: three_prime_UTR


>Vigan.05G073700.01
CCACAAGTAA GATCATGAGT CACCCCAATC CTACTATACT CTTTTAGCAT TTAGTTACTT TTCAAAATTA AGCTTCTTCT
TTATCCTTCT CTTCTCCCTG GATTGCCAGA ATAGATTAAT ATTACATGTA TGCTATTTCA TGCATTACAA AGCCAATGAA
CACCTAAATT AAGTTGTTTT TCAATTCTAC ATTTCTAACA GGTGTATCTG ACCTTTTCTT CTACCCCCTT ATAATTTATT
TACGTTCCTT TCACTTCCTC CATAGAATAA ATGAATTCTC TCTTCTTTAC ATGAATTTTC TTCTTTCTTT ATGTTCCTTT
CACTTCCTCC TTTTGACTCT GACATTCCAA CTGCATATTT TGTATGCGAC AGAATTCTAG GCTACTCCAA AAGTAGAGAG
AGAATGTCTC CAATGAAGTT TTGTGTAGCT GTGGTATTGT TTTTGTTTGC AACTACTACG GAAGGCCAAC ATCATCGAAT
TCTTTTGGAT ACAGATGTTG ATACTGATGA TGTATTTGCT CTGCTCTACC TTTTGAAGCT CAATAGATCA GAGTTTCGAT
TGGAGGGAGT GACAATTAGT GCAAATGCCT GGACTAATGT GGGACATGCT GTGAATCAAG TTTATGACAT ACTTTACATG
ATGGGACGAG ATGACATAGC TGTTGGAATG GGAGGTGAGG GTGGAATACT CCCAAACGGT ACCATACTCC CAAATGTAGG
TGGATATCTT TCAATTATAG AACAGGGAAT GACAACAACA GGAGCTTGCA GATACAGGCA AGCCATTCCT AAGGGCCGAA
GAGGGCTCTT AGATATTGAT ACTAATTATG GCATACGAAA AGCTTTCCTT CCACAGGGGA GAAGAAAATA CACTCCCTTA
CAACAAGCAA CTGCTCAGCA AGTGCTGATT GAGAAAATAT CTGCAGGTCC AATAAGTTTG ATTGTGATAG GGGTGCAAAC
AAACATTGCT ATTTTTCTTA TGAATAATCC ACACTTGAAG AAAAATGTGG AACATATTTA CATCATGGGT GGTGGTGTAA
GGTCAAGAAA CCCAACTTGT TGCCCCCAAA ATGCTTCCTC TTCCTGTGTT CCTAAGCAAT GTGGTGACCG AGGCAATTTA
TTCACAAATT ATAAAGCAAA CCCTTATGCA GAGTTCAATA TATTTGGTGA CCCTTTTGCA GCATATCAGG TTATTCATTC
TGGTATACCT ATTACACTTG TCCCTCTTGA TGCAACAAAC ACAATTCCCA TCACTGAAGA ATTCTTTAAT GAATTTGAGA
AAAGTCAAGA CACATACGAG GCACAATACT GTTTCAAGTC CTTGAAAATG GCCAAAATGG CTCGTGATAC TTGGCTTGAC
AACCAATTTT ACACGAGTTA TTTTATGTGG GATTCTTTCA CATCTGGTGT AGCAATCTCA AGCATGAGAA ACTCGAATAA
AAAAAATGAA TTTGCTGAGA TGGAGTACAG AAACATAACT GTAATCACTT CTAACAAACC ATTTGGAATA TGTGATGGCT
CTAATCCATT CTTTGATGGC CTCAAAGTAC CTAAATTCAA TCTAAAGAAA GGTGGAGTGC ACAGTGGTCA TGTTCAACAA
GGGCTTAAAG ATCAATTTTG CCTTGTCAAG AATGGGAAAG GTAGATGTCA GGATGGTTAT ACATCTGAGG TGGATGGTCC
TAACTCAGTC AAAGTACTTA TTGCCACTAA AGCAAAGCCT AACCAAGATG TTAGGAGTCC ACTTGACAAG CAATATTTCA
AAAGCTTCTT AAATGTTTTA AAGCAACCAC AAAATTCTGG GAGGTTCAAC TTCAGTACAC AGTTTCCTCA CTACAAAGAA
GTAACTTACG TGCCAAATTT TCAAAACAAA ACACTGGGGA AACCTGTTGT GTTTGATATG GACATGAGCA TAGGAGATTT
TCTTGCTCTA TTCTACCTCC TCAAAGTTGA TGTTCAAGTT ATAAATCTTA AGGCAATAAT TGTGAGTCCA ACTGGGTGGA
CAAATGCTGC AACAATAGAT GTGATTTATG ACTTACTACA CATGATGGGT CGTGATGATA TCCCAGTTGG TCTTGGTGAA
GTTTTTGCAG TGAATGAATC AGACCCACAA TTTCCACTTG TTGGAGATTG CAACTATGCT AAAGCAATTC CCCATGGAAA
TGGTGGACTT TTGGACTCTG ACACTCTTTA TGGACTTGCT CGTGATTTGC CACGTAGTCC CAAAAGGTAT ACACCTATAA
ATTCTATGAA GTTTGAAGCC ACTCAAGATA CTGATCACCT TAATTTCAGA CAACCATTGG CAATGGAAAT TTGGGAGTCT
GTATTGCAAA CAATGGAACC TAGATCTAAG ATTACAGTAT TAACCAATGG ACCCTTGACT ACTTTGGCAA AGGTTGTATC
ACTGAAAAAC ATTAGCTCAA GAATTGAGGA GGTTTATGTA GTGGGAGGAC ACATCAACAA GAATGTCTAT GACAAAGGAA
ATGTATTTTC TGTTCCTTCC AACCACTATG CAGAATTTAA TATGTTCCTA GATCCTTTAG CAGCCAAAAT AGTGTTTCAA
TCAGAAGTTA ACATCACACT CATTCCACTC AATGTCCAGC ATATAGCAAG TTCGTTTTCA CACATTTTAT GTTGGTTGCG
TAGGATTGAA CAGACACCTG AAGTTGTTTT TTCCAATCGT GTGCTTTTAA GGCTACAACG TCTGAAGAAA AGCCACCACA
GATATCAGCA TATGGATACA TTCTTAGGAG AAATTCTGGG TGCTGTTGTC CTAGCTGACA AGTATTCAGG TCTAAGTGAA
AAATTTGAGG TGAAGCCGGT TAAAGTCTTG GCCGAAGGAG ATGTGTCCAT CGATGGAAAA ATGGTGGTGG ATGAGGAAGA
TGGAAAATTA GTCAGAATTT TAAGCCATGT GAATGCCAAG GCTTATCATA AGATGTATGC AAATAGGCTT GGTGACTGGA
ACCAATCGGC TAAGGTAGGA AGCTTTGAAG ATCAGAGAAG GAAATGGAGT CATCCACATT CCTCATGACA AAACCTTGAG
GGAACTGCCT CATGGTTCCC CTCTGAAAGA ACATGTTTTC TTATTCTATA CACTGGAGTT TTTGCTGTGG TTGATATTAT
TCAAGCCTTA ATGTATACAC TTTTAAGTTT CATATATAGG AAAAGAAATA AAGTAACTTA GGATACGATA AATACTTCAA
AGCAAAATAT AACAGATTAA CCTATACTGA TTTTGGCTAT CATCTTGTAA TTACTATGAC AATTGTATCA ACTTTAGATC
AAACAGTGTA CTACAATGCC TAAACTTAAA AAATGTTATG TATCAAACAC GAGTAACGAC CATAAACTTT CGAATAGTAT
AATATTCAAA GTTTAAAGAT TCTGTCATGA GTAGCAGTTG TCTCTACCAA AACAAAAATA AAAATATATG GCGG

>Vigan.05G073700.01
ATGTTCCTTT CACTTCCTCC TTTTGACTCT GACATTCCAA CTGCATATTT TGTATGCGAC AGAATTCTAG GCTACTCCAA
AAGTAGAGAG AGAATGTCTC CAATGAAGTT TTGTGTAGCT GTGGTATTGT TTTTGTTTGC AACTACTACG GAAGGCCAAC
ATCATCGAAT TCTTTTGGAT ACAGATGTTG ATACTGATGA TGTATTTGCT CTGCTCTACC TTTTGAAGCT CAATAGATCA
GAGTTTCGAT TGGAGGGAGT GACAATTAGT GCAAATGCCT GGACTAATGT GGGACATGCT GTGAATCAAG TTTATGACAT
ACTTTACATG ATGGGACGAG ATGACATAGC TGTTGGAATG GGAGGTGAGG GTGGAATACT CCCAAACGGT ACCATACTCC
CAAATGTAGG TGGATATCTT TCAATTATAG AACAGGGAAT GACAACAACA GGAGCTTGCA GATACAGGCA AGCCATTCCT
AAGGGCCGAA GAGGGCTCTT AGATATTGAT ACTAATTATG GCATACGAAA AGCTTTCCTT CCACAGGGGA GAAGAAAATA
CACTCCCTTA CAACAAGCAA CTGCTCAGCA AGTGCTGATT GAGAAAATAT CTGCAGGTCC AATAAGTTTG ATTGTGATAG
GGGTGCAAAC AAACATTGCT ATTTTTCTTA TGAATAATCC ACACTTGAAG AAAAATGTGG AACATATTTA CATCATGGGT
GGTGGTGTAA GGTCAAGAAA CCCAACTTGT TGCCCCCAAA ATGCTTCCTC TTCCTGTGTT CCTAAGCAAT GTGGTGACCG
AGGCAATTTA TTCACAAATT ATAAAGCAAA CCCTTATGCA GAGTTCAATA TATTTGGTGA CCCTTTTGCA GCATATCAGG
TTATTCATTC TGGTATACCT ATTACACTTG TCCCTCTTGA TGCAACAAAC ACAATTCCCA TCACTGAAGA ATTCTTTAAT
GAATTTGAGA AAAGTCAAGA CACATACGAG GCACAATACT GTTTCAAGTC CTTGAAAATG GCCAAAATGG CTCGTGATAC
TTGGCTTGAC AACCAATTTT ACACGAGTTA TTTTATGTGG GATTCTTTCA CATCTGGTGT AGCAATCTCA AGCATGAGAA
ACTCGAATAA AAAAAATGAA TTTGCTGAGA TGGAGTACAG AAACATAACT GTAATCACTT CTAACAAACC ATTTGGAATA
TGTGATGGCT CTAATCCATT CTTTGATGGC CTCAAAGTAC CTAAATTCAA TCTAAAGAAA GGTGGAGTGC ACAGTGGTCA
TGTTCAACAA GGGCTTAAAG ATCAATTTTG CCTTGTCAAG AATGGGAAAG GTAGATGTCA GGATGGTTAT ACATCTGAGG
TGGATGGTCC TAACTCAGTC AAAGTACTTA TTGCCACTAA AGCAAAGCCT AACCAAGATG TTAGGAGTCC ACTTGACAAG
CAATATTTCA AAAGCTTCTT AAATGTTTTA AAGCAACCAC AAAATTCTGG GAGGTTCAAC TTCAGTACAC AGTTTCCTCA
CTACAAAGAA GTAACTTACG TGCCAAATTT TCAAAACAAA ACACTGGGGA AACCTGTTGT GTTTGATATG GACATGAGCA
TAGGAGATTT TCTTGCTCTA TTCTACCTCC TCAAAGTTGA TGTTCAAGTT ATAAATCTTA AGGCAATAAT TGTGAGTCCA
ACTGGGTGGA CAAATGCTGC AACAATAGAT GTGATTTATG ACTTACTACA CATGATGGGT CGTGATGATA TCCCAGTTGG
TCTTGGTGAA GTTTTTGCAG TGAATGAATC AGACCCACAA TTTCCACTTG TTGGAGATTG CAACTATGCT AAAGCAATTC
CCCATGGAAA TGGTGGACTT TTGGACTCTG ACACTCTTTA TGGACTTGCT CGTGATTTGC CACGTAGTCC CAAAAGGTAT
ACACCTATAA ATTCTATGAA GTTTGAAGCC ACTCAAGATA CTGATCACCT TAATTTCAGA CAACCATTGG CAATGGAAAT
TTGGGAGTCT GTATTGCAAA CAATGGAACC TAGATCTAAG ATTACAGTAT TAACCAATGG ACCCTTGACT ACTTTGGCAA
AGGTTGTATC ACTGAAAAAC ATTAGCTCAA GAATTGAGGA GGTTTATGTA GTGGGAGGAC ACATCAACAA GAATGTCTAT
GACAAAGGAA ATGTATTTTC TGTTCCTTCC AACCACTATG CAGAATTTAA TATGTTCCTA GATCCTTTAG CAGCCAAAAT
AGTGTTTCAA TCAGAAGTTA ACATCACACT CATTCCACTC AATGTCCAGC ATATAGCAAG TTCGTTTTCA CACATTTTAT
GTTGGTTGCG TAGGATTGAA CAGACACCTG AAGTTGTTTT TTCCAATCGT GTGCTTTTAA GGCTACAACG TCTGAAGAAA
AGCCACCACA GATATCAGCA TATGGATACA TTCTTAGGAG AAATTCTGGG TGCTGTTGTC CTAGCTGACA AGTATTCAGG
TCTAAGTGAA AAATTTGAGG TGAAGCCGGT TAAAGTCTTG GCCGAAGGAG ATGTGTCCAT CGATGGAAAA ATGGTGGTGG
ATGAGGAAGA TGGAAAATTA GTCAGAATTT TAAGCCATGT GAATGCCAAG GCTTATCATA AGATGTATGC AAATAGGCTT
GGTGACTGGA ACCAATCGGC TAAGGTAGGA AGCTTTGAAG ATCAGAGAAG GAAATGGAGT CATCCACATT CCTCATGA

>Vigan.05G073700.01
MFLSLPPFDS DIPTAYFVCD RILGYSKSRE RMSPMKFCVA VVLFLFATTT EGQHHRILLD TDVDTDDVFA LLYLLKLNRS
EFRLEGVTIS ANAWTNVGHA VNQVYDILYM MGRDDIAVGM GGEGGILPNG TILPNVGGYL SIIEQGMTTT GACRYRQAIP
KGRRGLLDID TNYGIRKAFL PQGRRKYTPL QQATAQQVLI EKISAGPISL IVIGVQTNIA IFLMNNPHLK KNVEHIYIMG
GGVRSRNPTC CPQNASSSCV PKQCGDRGNL FTNYKANPYA EFNIFGDPFA AYQVIHSGIP ITLVPLDATN TIPITEEFFN
EFEKSQDTYE AQYCFKSLKM AKMARDTWLD NQFYTSYFMW DSFTSGVAIS SMRNSNKKNE FAEMEYRNIT VITSNKPFGI
CDGSNPFFDG LKVPKFNLKK GGVHSGHVQQ GLKDQFCLVK NGKGRCQDGY TSEVDGPNSV KVLIATKAKP NQDVRSPLDK
QYFKSFLNVL KQPQNSGRFN FSTQFPHYKE VTYVPNFQNK TLGKPVVFDM DMSIGDFLAL FYLLKVDVQV INLKAIIVSP
TGWTNAATID VIYDLLHMMG RDDIPVGLGE VFAVNESDPQ FPLVGDCNYA KAIPHGNGGL LDSDTLYGLA RDLPRSPKRY
TPINSMKFEA TQDTDHLNFR QPLAMEIWES VLQTMEPRSK ITVLTNGPLT TLAKVVSLKN ISSRIEEVYV VGGHINKNVY
DKGNVFSVPS NHYAEFNMFL DPLAAKIVFQ SEVNITLIPL NVQHIASSFS HILCWLRRIE QTPEVVFSNR VLLRLQRLKK
SHHRYQHMDT FLGEILGAVV LADKYSGLSE KFEVKPVKVL AEGDVSIDGK MVVDEEDGKL VRILSHVNAK AYHKMYANRL
GDWNQSAKVG SFEDQRRKWS HPHSS*