GBrowse Details

Vigan.05G075100.01

Basic Information:
Name: Vigan.05G075100.01
Multiple alignment
Variant Information
Position: Chr05:5542506..5544070 (+ strand)
Length: 1565
Functional Information:
Description: Similar to peptide methionine sulfoxide reductase B3, chloroplastic-like. [XP_004486092.1, Cicer arietinum]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: protein repair (GO:0030091)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor (GO:0016671)
Molecular Function: peptide-methionine (R)-S-oxide reductase activity (GO:0033743)
InterPro: Peptide methionine sulphoxide reductase MrsB (IPR002579)
Mss4-like (IPR011057)
Peptide methionine sulfoxide reductase (IPR028427)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.95,15.44,15.99,27.64,19.51,31.83,64.54,22.68
Automatic updates:
Name: NM_001250139 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305558 (LOC100305558), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250618 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499893 (LOC100499893), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:5542506..5542765 (+ strand)
Length: 260
Type: five_prime_UTR
Position: Chr05:5542766..5542860 (+ strand)
Length: 95
Type: CDS
Position: Chr05:5543510..5543666 (+ strand)
Length: 157
Type: CDS
Position: Chr05:5543775..5543939 (+ strand)
Length: 165
Type: CDS
Position: Chr05:5543940..5544070 (+ strand)
Length: 131
Type: three_prime_UTR


>Vigan.05G075100.01
GAAAATTTTT GTTATGTTTT TGGTGTTTTT TTTTCTTCAG CAGTAGCGTA ACTCGTGCTG ACACAAGCAT GAGAAAGTAA
GCGCAAGAGC GTGTCAATAA TCTTATCACA TCTGTCTCTG TCTAGATCCA ATTTTCTGTC CAAGTTCATT CTCCAGGAAA
ATGATTTTAG TATATATATA TATATTCCCC GTTGTTGCTT TTCCAATGGA ACTGGGCTCT GTAATTTGGG GATTTCACCA
CTCTGAGCAT CAGCGAAAAA ATGGCAGCAC CAACACCGAT TAATAAAACA GAAGAGGAAT GGAAGGTGAT TCTCTCCCCG
GAGCAGTTTC GGATCCTTCG CCAGAAAGGA ACTGAATTGA AGGGTACGGG AGAATATAAC AAATTTTATG AAGAAGGAGT
TTACAACTGT GGTGGCTGTG GAACTCCTCT TTACAAGTCT TCAACAAAGT TTGACTCTGG TTGTGGCTGG CCTGCTTTCT
ATGAGGGTTT TCCTGGGGCC ATCAACCGAT CTCCTGACCC AGATGGGAGG AGGACAGAGA TAACTTGTGC AGCCTGTGGT
GGGCACTTGG GTCATGTTTT CAAAGGAGAG GGATTCAAAA CCCCAACTGA TGAACGCCAT TGTGTGAATA GTATTTCTGT
CAAATTTGTT CCAGGAAATG CTACTGCTTC AATATGAAAC CTTCCTCTAT TGGAAGTGTT TATTGAAACA TTGTCTTTGT
TTGAAGTTTT AATTTGATTT TTAAAGATAG CTAGCTTAGT CCAGTGGCTA AAAGCTTGAA TAATTGAGCA TGGACCGTAG
TTCTTGAA

>Vigan.05G075100.01
ATGGCAGCAC CAACACCGAT TAATAAAACA GAAGAGGAAT GGAAGGTGAT TCTCTCCCCG GAGCAGTTTC GGATCCTTCG
CCAGAAAGGA ACTGAATTGA AGGGTACGGG AGAATATAAC AAATTTTATG AAGAAGGAGT TTACAACTGT GGTGGCTGTG
GAACTCCTCT TTACAAGTCT TCAACAAAGT TTGACTCTGG TTGTGGCTGG CCTGCTTTCT ATGAGGGTTT TCCTGGGGCC
ATCAACCGAT CTCCTGACCC AGATGGGAGG AGGACAGAGA TAACTTGTGC AGCCTGTGGT GGGCACTTGG GTCATGTTTT
CAAAGGAGAG GGATTCAAAA CCCCAACTGA TGAACGCCAT TGTGTGAATA GTATTTCTGT CAAATTTGTT CCAGGAAATG
CTACTGCTTC AATATGA

>Vigan.05G075100.01
MAAPTPINKT EEEWKVILSP EQFRILRQKG TELKGTGEYN KFYEEGVYNC GGCGTPLYKS STKFDSGCGW PAFYEGFPGA
INRSPDPDGR RTEITCAACG GHLGHVFKGE GFKTPTDERH CVNSISVKFV PGNATASI*