GBrowse Details

Vigan.05G078200.01

Basic Information:
Name: Vigan.05G078200.01
Multiple alignment
Variant Information
Position: Chr05:5847708..5855482 (+ strand)
Length: 7775
Functional Information:
Description: Similar to TVP38/TMEM64 family membrane protein slr0305-like. [XP_004486152.1, Cicer arietinum]
InterPro: SNARE associated Golgi protein (IPR015414)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:157.17,99.10,18.25,15.98,22.58,20.15,18.59,21.12
Arabidopsis thaliana homolog: AT5G19070.1
Automatic updates:
Name: NM_001252841 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max TVP38/TMEM64 family membrane protein slr0305-like (LOC100810779), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:5847708..5848125 (+ strand)
Length: 418
Type: five_prime_UTR
Position: Chr05:5848126..5848221 (+ strand)
Length: 96
Type: CDS
Position: Chr05:5848308..5848369 (+ strand)
Length: 62
Type: CDS
Position: Chr05:5848471..5848525 (+ strand)
Length: 55
Type: CDS
Position: Chr05:5850904..5851002 (+ strand)
Length: 99
Type: CDS
Position: Chr05:5851251..5851337 (+ strand)
Length: 87
Type: CDS
Position: Chr05:5852189..5852305 (+ strand)
Length: 117
Type: CDS
Position: Chr05:5853228..5853320 (+ strand)
Length: 93
Type: CDS
Position: Chr05:5853919..5853949 (+ strand)
Length: 31
Type: CDS
Position: Chr05:5854955..5855136 (+ strand)
Length: 182
Type: CDS
Position: Chr05:5855137..5855482 (+ strand)
Length: 346
Type: three_prime_UTR


>Vigan.05G078200.01
TGTCGGTTAT GGCAATGGTG CTTATAAAGC GCAGACCATG GCGGTGGTAG AAGTAGAAGC AACGCATGGT GTGTGAGAAT
TTACGAAACT ACCCAGCCAA CAGGAATATC CGATATTCGC CTCACCACCA CCCTTTGTTT CTCTCTCTGT TGCCAACAAC
CGTTTCTATT CCAGCGAAAA AAGATACAAT AATAGAATTG GCGAAAGAAA GAAAGGTGAA TGTGAGTCGG AGCGTTTGTG
GTCTAAAGTT GGGTGGTGGT GGCAGAGAGA GAGAGAAAGA GAGAGAGAGA GAGAGAAAAT CAATCGAATA AATCTGGCAA
ATCTTGTGGG ATTGAGGGCT CGGTCTTCCT CCAAGCAAGC TTCCCCTGAT TTGCAAGACG AGGAGGAGGA GTGCAGACCT
TGGCGTCGTC GCTTAACCAT GTCTTTCTCT TGGGCCTCCG CCCTGAGGAT CACCATCCTC CTCCTCCTCC TTGCTGCCGT
CATCACCGCG TGCTTCACTC TACCAGTCGA GAAGATGATG AAGGACTTCT TATTATGGGT CGATCACGAT CTTGGGCCCT
GGGGCCCAAT CGTTCTGGCT GTTGCTTACA TTCCTTTGAC TGTCTTGGCA GTGCCAGCTT CGGTGCTTAC GCTTGGGGGT
GGTTATCTTT TTGGGCTTCC AGTGGGTTTT GTTGCTGATT CTATAGGTGC AACTATTGGT GCCGGAGCTG CATTTCTCCT
TGGCAGAACA ATTGGAAGAT CATTTGTTGT TTCTAGGTTG AAGGATTATC CACAATTCAA ATCAGTGGCA ATTGCGATTC
GAAGATCAGG CTTTAAGATT GTATTACTGC TTCGGCTTGT TCCACTTCTA CCGTTTAACA TGTTAAATTA TCTCTTATCG
GTGACTCCTG TTTCGGTGGG GGAATACATG CTGGCTTCCT GGTTAGGAAT GATGCCAATA ACATTGGCAC TGGTATATGT
TGGAACAACT TTAAAAGATC TTTCTGATGT GACACATGGT TGGGGCGAGT TTTCAAAGAC TCGTTGGGCT TTTATCATTC
TTGGTCTTGT GATATCTGTG ATTCTGATGA TATGTGTGAC TAGAGTTGCC AAGTCTGCTT TAGATAAAGC CTTGGCTGAA
AATGAAGACA TTGATGATAT TATTTCTCCT GAGTTACCTA TTGTTGCTGA AGCATCACCA AGTCTCAACC AACCTCTGAT
AATTAAGATA GATTCTGCTG AAGACAGTCA TGAAAAGTAA AATCCTTTTT GTGTAAATTC TTTTTCCATC CTACCCTCTA
AAGGCTATAT GCTTTTTTAA TTAAAGCTTA GAGGTAGCTG CCTGCTTCTA TTTATTCGCG ATTTGTACAG AGTCAAATTT
AGAAATAGTG TTTAATCCTA CAACCAATGT CACATTATTG ACTGCGTATC TTGCTTAACA CAACAAAAGT TAATGCTATG
AACCATTCAT CATTCTCTTT GTTTAGATTG TATTGCAGTC ATTGACTATT CAGATCTTGA TTGCATGAAT TCTAAAAAAC
TGCTACCATT ACTTTTAGAA TAAGAAAATT CTTTGTTGAT TTTTTAAAAG GTCAATTTAA AATGGG

>Vigan.05G078200.01
ATGTCTTTCT CTTGGGCCTC CGCCCTGAGG ATCACCATCC TCCTCCTCCT CCTTGCTGCC GTCATCACCG CGTGCTTCAC
TCTACCAGTC GAGAAGATGA TGAAGGACTT CTTATTATGG GTCGATCACG ATCTTGGGCC CTGGGGCCCA ATCGTTCTGG
CTGTTGCTTA CATTCCTTTG ACTGTCTTGG CAGTGCCAGC TTCGGTGCTT ACGCTTGGGG GTGGTTATCT TTTTGGGCTT
CCAGTGGGTT TTGTTGCTGA TTCTATAGGT GCAACTATTG GTGCCGGAGC TGCATTTCTC CTTGGCAGAA CAATTGGAAG
ATCATTTGTT GTTTCTAGGT TGAAGGATTA TCCACAATTC AAATCAGTGG CAATTGCGAT TCGAAGATCA GGCTTTAAGA
TTGTATTACT GCTTCGGCTT GTTCCACTTC TACCGTTTAA CATGTTAAAT TATCTCTTAT CGGTGACTCC TGTTTCGGTG
GGGGAATACA TGCTGGCTTC CTGGTTAGGA ATGATGCCAA TAACATTGGC ACTGGTATAT GTTGGAACAA CTTTAAAAGA
TCTTTCTGAT GTGACACATG GTTGGGGCGA GTTTTCAAAG ACTCGTTGGG CTTTTATCAT TCTTGGTCTT GTGATATCTG
TGATTCTGAT GATATGTGTG ACTAGAGTTG CCAAGTCTGC TTTAGATAAA GCCTTGGCTG AAAATGAAGA CATTGATGAT
ATTATTTCTC CTGAGTTACC TATTGTTGCT GAAGCATCAC CAAGTCTCAA CCAACCTCTG ATAATTAAGA TAGATTCTGC
TGAAGACAGT CATGAAAAGT AA

>Vigan.05G078200.01
MSFSWASALR ITILLLLLAA VITACFTLPV EKMMKDFLLW VDHDLGPWGP IVLAVAYIPL TVLAVPASVL TLGGGYLFGL
PVGFVADSIG ATIGAGAAFL LGRTIGRSFV VSRLKDYPQF KSVAIAIRRS GFKIVLLLRL VPLLPFNMLN YLLSVTPVSV
GEYMLASWLG MMPITLALVY VGTTLKDLSD VTHGWGEFSK TRWAFIILGL VISVILMICV TRVAKSALDK ALAENEDIDD
IISPELPIVA EASPSLNQPL IIKIDSAEDS HEK*