GBrowse Details

Vigan.05G079200.01

Basic Information:
Name: Vigan.05G079200.01
Multiple alignment
Variant Information
Position: Chr05:5958205..5964343 (- strand)
Length: 6139
Functional Information:
Description: Similar to Dihydroxyacid dehydratase. [D2DKF0, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Biological Process: branched-chain amino acid biosynthetic process (GO:0009082)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: dihydroxy-acid dehydratase activity (GO:0004160)
InterPro: Dihydroxy-acid/6-phosphogluconate dehydratase (IPR000581)
Dihydroxy-acid dehydratase (IPR004404)
Aconitase/3-isopropylmalate dehydratase, swivel (IPR015928)
Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site (IPR020558)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.89,6.99,19.75,11.57,22.64,26.19,11.73,13.80
Arabidopsis thaliana homolog: AT3G23940.1
Automatic updates:
Name: NM_001289215 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative dihydroxy-acid dehydratase, mitochondrial-like (LOC100806689), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:5958205..5958857 (- strand)
Length: 653
Type: three_prime_UTR
Position: Chr05:5958858..5958908 (- strand)
Length: 51
Type: CDS
Position: Chr05:5959351..5959509 (- strand)
Length: 159
Type: CDS
Position: Chr05:5960332..5960412 (- strand)
Length: 81
Type: CDS
Position: Chr05:5960699..5960800 (- strand)
Length: 102
Type: CDS
Position: Chr05:5961287..5961357 (- strand)
Length: 71
Type: CDS
Position: Chr05:5961461..5961584 (- strand)
Length: 124
Type: CDS
Position: Chr05:5961675..5961733 (- strand)
Length: 59
Type: CDS
Position: Chr05:5961830..5961899 (- strand)
Length: 70
Type: CDS
Position: Chr05:5962036..5962147 (- strand)
Length: 112
Type: CDS
Position: Chr05:5962228..5962422 (- strand)
Length: 195
Type: CDS
Position: Chr05:5962494..5962648 (- strand)
Length: 155
Type: CDS
Position: Chr05:5963063..5963110 (- strand)
Length: 48
Type: CDS
Position: Chr05:5963569..5963640 (- strand)
Length: 72
Type: CDS
Position: Chr05:5963719..5964225 (- strand)
Length: 507
Type: CDS
Position: Chr05:5964226..5964343 (- strand)
Length: 118
Type: five_prime_UTR


>Vigan.05G079200.01
CAAGAAATCA ACTCATCAGA GCCTCTGTGA CCCCTTTCCC TAAACCTTTA GAAGTGTTTT GCGGTGCGCC TCTCTCTCTC
TCTCTCTCTC TCTCTCTCTC TCTAACCCGC ACTTCAGAAT GCAGTCCACA CTCTTCTCTC CCACTCACAC CTTTATCCCC
ACTTCGCCGC AATCTCTCAG ATCCCATTCT CGTTCATGTT CTCTCTCCGT TCGAGCCTCC GTCGCGGTGG ACACCACCAC
CGAAGCTGTC AAGTTGAACA AGTACAGTTC CCGAATCACG GAACCGAAGT CGCAGGGAGC GTCTCAGGCC GTGCTCTACG
GCGTAGGACT CTCAGAGGAG GACATGGCGA AGCCGCAGGT GGGCGTCTCC TCGGTCTGGT ACGAGGGAAA CACTTGTAAT
ATGCATCTCC TTCTTCTCTC TGAAGCCGTC CGCGAAGGTG TGGCCGCCGC TGGCATGGTT CCCTTCCGCT TCAACACCAT
CGGCGTCAGC GACGCCATAT CCATGGGCAC CAGAGGTATG TGCTACAGCT TGCAGTCCAG AGACCTCATT GCCGATAGCA
TTGAAACCGT TATGGCTGCG CAGTGGTACG ACGCTAACAT TTCCATCCCC GGCTGTGACA AAAATATGCC AGGTACTATC
ATTGCCATGG GCAGGCTCAA CAGACCTAGT ATCATGGTTT ATGGCGGGAC TATAAAGCCT GGTCATTTTC AGGGCAATAC
GTTTGATATA GTGTCTGCCT TTCAGTGCTA TGGAGAATTT GTGAGTGGAT CAATTAGTGA TGATCAAAGA CAAAATGTTA
TTCGCAATTC TTGCCCTGGT GCTGGGGCCT GTGGTGGCAT GTATACAGCT AATACCATGG CTTCTGCAAT AGAAGCTATG
GGAATGTCTC TTCCCTATAG CTCGTCTACT CCAGCTGAGG ATCCACTAAA GTTGGATGAG TGTCGGTTAG CTGGGAAATA
TCTACTTGAG TTACTGAAGA TGGACTTAAA GCCTCGAGAT ATCATCACTC GTAAATCACT ACGTAATGCA ATGGTTGTAG
TTATGGCACT TGGTGGTTCT ACTAATGCTG TGCTACATTT TATTGCTATA GCCAAGTCGG TTGGCATTGA TTTGACTCTT
GATGATTTTC AGAAGGTTAG CGACGAGGTT CCTTTTATCG CAGATCTTAA GCCTAGTGGG AAATACGTCA TGGAAGATCT
TCACAAGATT GGAGGAACCC CTGCAGTTAT CCGTTACCTT CTTGAGGAAG GCCTTTTAGA CGGTGACTGT TTAACTGTCA
CTGGAAAAAC CCTTGCTGAA AATGCAGAAC TTGTCCCTCC TTTGTCCAAA GGGCAGGAAA TAATAAGGCC GCTAGAAAAT
CCCATCAAGA AGACGGGTCA CATTCAAATA TTATATGGAA ACCTTGCACC ACAGGGTTCT GTCGCTAAAA TTACTGGAAA
AGAAGGACTG TACTTTTCTG GTCCTGCACT TGTGTTTGAA GGAGAGGAGG CGATGATTGC TGCTATATCA GAGGATCCTT
CGAGTTTTAA GGGTAAAGTG GTTGTGATCA GGGGAGAGGG ACCCAAGGGT GGTCCAGGCA TGCCTGAGAT GTTAACACCA
ACAAGTGCAA TAATGGGTGC AGGTCTCGGA ATGGAAGTTG CATTATTGAC TGATGGAAGA TTTTCAGGAG GTTCACATGG
ATTTGTGGTT GGCCATATAT GCCCCGAAGC ACAGGAAGGT GGTCCAATTG GCTTGATTAA AAATGGAGAC ATAATCAACG
TTGACGTCCA AAAAAGGAGA ATTGATGTTT TGGTATCAGA TGAGGAGATG GAGGCACGCA AAAAAAATTG GACTGCTCCT
CCATATAAAG CTAACCAAGG AGCACTGTAC AAGTATATTA AAAATGTGAA ATCTGCTTCT AGTGGATGCG TGACGGATGA
GTAGAAAGGC ATTTCGAGAG CAAAAAAGCT GATTGTATGC CTTGATAGCG GTTTAATGAG GTATTGCAAT TTTGGCTTAC
ACGGTGCATG TACATGTAGC CCGATGTGTC TTGGATTTTT GTTATTTTTT GGCTATTATT ATAGACTTGA ATGGCACCAC
CTGTCTTTTC TCTCGTGCTT GATCTCATAT ATTTATTTTC TTTTCTTCAG TTATTAAATT TTCTATCAGT TAGAAGTGAA
ATTTTGTATC TTAAGCTTCC AGAACAGATT GGCTAAAGTT GAATTGGCAG TTGATTAATT AGATTTTCTA GAGCGACCTC
TTTGTTGTTT ATAGCCTTCC GACATAGCAA CTGTTATTTT TAAATGATAG AAAATGGGAG TTTCATTGCA TTGGCAACTA
CAAATGAGGT TTCAAAGTGC CATAACAGCT ACGATGTGAA GCTTGATTAA ATCAATGAAA ATGGTTGAAA GTTTATGCTA
TTGTATCTGC AAGCTCGGTT GAAGCTGGCT GGCAAGTATT TAAGTTCAGC CTTGAGAATT ACATCTTAAT TTCTTCAGCA
CCTAAGCGGG GTAGGGTACA ACTCCAGTGG GTATTTTTCA GTAGCTTTGT TTCTGTCAAA ACAAAAAAAT AGCCGTTGAA
ATAGAATGAA GTAGTGG

>Vigan.05G079200.01
ATGCAGTCCA CACTCTTCTC TCCCACTCAC ACCTTTATCC CCACTTCGCC GCAATCTCTC AGATCCCATT CTCGTTCATG
TTCTCTCTCC GTTCGAGCCT CCGTCGCGGT GGACACCACC ACCGAAGCTG TCAAGTTGAA CAAGTACAGT TCCCGAATCA
CGGAACCGAA GTCGCAGGGA GCGTCTCAGG CCGTGCTCTA CGGCGTAGGA CTCTCAGAGG AGGACATGGC GAAGCCGCAG
GTGGGCGTCT CCTCGGTCTG GTACGAGGGA AACACTTGTA ATATGCATCT CCTTCTTCTC TCTGAAGCCG TCCGCGAAGG
TGTGGCCGCC GCTGGCATGG TTCCCTTCCG CTTCAACACC ATCGGCGTCA GCGACGCCAT ATCCATGGGC ACCAGAGGTA
TGTGCTACAG CTTGCAGTCC AGAGACCTCA TTGCCGATAG CATTGAAACC GTTATGGCTG CGCAGTGGTA CGACGCTAAC
ATTTCCATCC CCGGCTGTGA CAAAAATATG CCAGGTACTA TCATTGCCAT GGGCAGGCTC AACAGACCTA GTATCATGGT
TTATGGCGGG ACTATAAAGC CTGGTCATTT TCAGGGCAAT ACGTTTGATA TAGTGTCTGC CTTTCAGTGC TATGGAGAAT
TTGTGAGTGG ATCAATTAGT GATGATCAAA GACAAAATGT TATTCGCAAT TCTTGCCCTG GTGCTGGGGC CTGTGGTGGC
ATGTATACAG CTAATACCAT GGCTTCTGCA ATAGAAGCTA TGGGAATGTC TCTTCCCTAT AGCTCGTCTA CTCCAGCTGA
GGATCCACTA AAGTTGGATG AGTGTCGGTT AGCTGGGAAA TATCTACTTG AGTTACTGAA GATGGACTTA AAGCCTCGAG
ATATCATCAC TCGTAAATCA CTACGTAATG CAATGGTTGT AGTTATGGCA CTTGGTGGTT CTACTAATGC TGTGCTACAT
TTTATTGCTA TAGCCAAGTC GGTTGGCATT GATTTGACTC TTGATGATTT TCAGAAGGTT AGCGACGAGG TTCCTTTTAT
CGCAGATCTT AAGCCTAGTG GGAAATACGT CATGGAAGAT CTTCACAAGA TTGGAGGAAC CCCTGCAGTT ATCCGTTACC
TTCTTGAGGA AGGCCTTTTA GACGGTGACT GTTTAACTGT CACTGGAAAA ACCCTTGCTG AAAATGCAGA ACTTGTCCCT
CCTTTGTCCA AAGGGCAGGA AATAATAAGG CCGCTAGAAA ATCCCATCAA GAAGACGGGT CACATTCAAA TATTATATGG
AAACCTTGCA CCACAGGGTT CTGTCGCTAA AATTACTGGA AAAGAAGGAC TGTACTTTTC TGGTCCTGCA CTTGTGTTTG
AAGGAGAGGA GGCGATGATT GCTGCTATAT CAGAGGATCC TTCGAGTTTT AAGGGTAAAG TGGTTGTGAT CAGGGGAGAG
GGACCCAAGG GTGGTCCAGG CATGCCTGAG ATGTTAACAC CAACAAGTGC AATAATGGGT GCAGGTCTCG GAATGGAAGT
TGCATTATTG ACTGATGGAA GATTTTCAGG AGGTTCACAT GGATTTGTGG TTGGCCATAT ATGCCCCGAA GCACAGGAAG
GTGGTCCAAT TGGCTTGATT AAAAATGGAG ACATAATCAA CGTTGACGTC CAAAAAAGGA GAATTGATGT TTTGGTATCA
GATGAGGAGA TGGAGGCACG CAAAAAAAAT TGGACTGCTC CTCCATATAA AGCTAACCAA GGAGCACTGT ACAAGTATAT
TAAAAATGTG AAATCTGCTT CTAGTGGATG CGTGACGGAT GAGTAG

>Vigan.05G079200.01
MQSTLFSPTH TFIPTSPQSL RSHSRSCSLS VRASVAVDTT TEAVKLNKYS SRITEPKSQG ASQAVLYGVG LSEEDMAKPQ
VGVSSVWYEG NTCNMHLLLL SEAVREGVAA AGMVPFRFNT IGVSDAISMG TRGMCYSLQS RDLIADSIET VMAAQWYDAN
ISIPGCDKNM PGTIIAMGRL NRPSIMVYGG TIKPGHFQGN TFDIVSAFQC YGEFVSGSIS DDQRQNVIRN SCPGAGACGG
MYTANTMASA IEAMGMSLPY SSSTPAEDPL KLDECRLAGK YLLELLKMDL KPRDIITRKS LRNAMVVVMA LGGSTNAVLH
FIAIAKSVGI DLTLDDFQKV SDEVPFIADL KPSGKYVMED LHKIGGTPAV IRYLLEEGLL DGDCLTVTGK TLAENAELVP
PLSKGQEIIR PLENPIKKTG HIQILYGNLA PQGSVAKITG KEGLYFSGPA LVFEGEEAMI AAISEDPSSF KGKVVVIRGE
GPKGGPGMPE MLTPTSAIMG AGLGMEVALL TDGRFSGGSH GFVVGHICPE AQEGGPIGLI KNGDIINVDV QKRRIDVLVS
DEEMEARKKN WTAPPYKANQ GALYKYIKNV KSASSGCVTD E*