GBrowse Details

Vigan.05G079300.01

Basic Information:
Name: Vigan.05G079300.01
Multiple alignment
Variant Information
Position: Chr05:6008062..6013406 (+ strand)
Length: 5345
Functional Information:
Description: Similar to ARG10. [O64438, Vigna radiata]
InterPro: Domain of unknown function DUF3700 (IPR024286)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:750.78,47.68,113.11,228.57,553.91,414.48,75.87,84.93
Arabidopsis thaliana homolog: AT5G19140.1
Automatic updates:
Name: NM_001255022 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stem-specific protein TSJT1-like (LOC100806163), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255936 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max Wali7 domain-contining protein (LOC100789239), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317286 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata stem-specific protein TSJT1-like (LOC106775911), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6008062..6008216 (+ strand)
Length: 155
Type: five_prime_UTR
Position: Chr05:6008217..6008419 (+ strand)
Length: 203
Type: CDS
Position: Chr05:6011848..6012088 (+ strand)
Length: 241
Type: CDS
Position: Chr05:6012169..6012289 (+ strand)
Length: 121
Type: CDS
Position: Chr05:6012432..6012541 (+ strand)
Length: 110
Type: CDS
Position: Chr05:6013124..6013162 (+ strand)
Length: 39
Type: CDS
Position: Chr05:6013163..6013406 (+ strand)
Length: 244
Type: three_prime_UTR


>Vigan.05G079300.01
TTTTTAATTT ATGTATGAAA TAACCGTGCT ACCCTCGTTC CTTCCCTTTA TAACGAAACC CACACTCTAC ACGCACTTCC
TATCCATTCT CACTTCCGTG TACTTTTGCG ATATATTTTT TTTATTTTTC TTTCTTTCAT TTTAGAGAGA GAAAAATGTT
GGCAATCTTG AGCAGCTCTG TGGTGTCGCC TCCCGAGGAG TTGGTAGCCG CAGGCAGTCG AACACCGTCA CCAAAGACAT
CAGCAGCGAA ACTGCTGACA CGTTTTGTGG AAAGCAAAGC ATCGGCGGTG TCGCTGCAGG TGGGGGAACA TGTGCAGTTG
GCTTACACAC ACCACAGCGA ATCACCCTGG CATCCTAGAT CATTTGCTGT TAAGGATGAA ATATTCTGCT TGTTTGAGGG
AGCTCTTGAC AATTTGGGCA GTCTGAGACA ACAGTATGGA CTGGCCAAAT CAGCCAGTGA AGTGATTTTG GTGATTGAGG
CTTACAAAGC TTTGCGTGAT CGAGCACCCT ACCCTGCCAA TCGTGTTGTT TGCCACCTCA GTGGGAGCTT TGCTTTTATA
GTTTTTGACA AGTCCACTTC TACAGTCTTT GTGGCTTCTG ATCAAGCTGG TAAAGTTCCT CTCTTTTGGG GAATTACAGC
TGATGGATAC GTAGCTTTTG CTGATGATGC AGACTTGCTT AAAGGTTCTT GTGGCAAGTC GCTTGCTTCT TTCCCTCAAG
GATGCTTTTA CTCTACAGCA GTTGGAGGAT TGAGATGCTA TGAGAATCCA AAGAACAAGA TTACTGCAGT ACCTGCCGAA
GAAGAAGAAA TCTGGGGTGC GACTTTTAAG GTGGAGGGAT CAACAGTTCT TGCAGCCACA GAGTACTAGA TCCATCTTGG
AGTACAGTAT GGTGTGATGT GTTAATGGAG TGATGACTGT AAGGCATGCA CAAGGGACCA TGTAAATACC TTTTGGTAAC
TATGAGAAAA GTGCTACTGG TAGTAGTTGT TTGTTCATTA GATAGGATTT ACTATGTTTC TGGTGTACAG TTGCGCTTTC
TGATGTAATA AAAATGTGCC TGAGTTTCTC TCATACTCAT TCTATATCAA GTGTGTCCGC AAAAGATGAT TCA

>Vigan.05G079300.01
ATGTTGGCAA TCTTGAGCAG CTCTGTGGTG TCGCCTCCCG AGGAGTTGGT AGCCGCAGGC AGTCGAACAC CGTCACCAAA
GACATCAGCA GCGAAACTGC TGACACGTTT TGTGGAAAGC AAAGCATCGG CGGTGTCGCT GCAGGTGGGG GAACATGTGC
AGTTGGCTTA CACACACCAC AGCGAATCAC CCTGGCATCC TAGATCATTT GCTGTTAAGG ATGAAATATT CTGCTTGTTT
GAGGGAGCTC TTGACAATTT GGGCAGTCTG AGACAACAGT ATGGACTGGC CAAATCAGCC AGTGAAGTGA TTTTGGTGAT
TGAGGCTTAC AAAGCTTTGC GTGATCGAGC ACCCTACCCT GCCAATCGTG TTGTTTGCCA CCTCAGTGGG AGCTTTGCTT
TTATAGTTTT TGACAAGTCC ACTTCTACAG TCTTTGTGGC TTCTGATCAA GCTGGTAAAG TTCCTCTCTT TTGGGGAATT
ACAGCTGATG GATACGTAGC TTTTGCTGAT GATGCAGACT TGCTTAAAGG TTCTTGTGGC AAGTCGCTTG CTTCTTTCCC
TCAAGGATGC TTTTACTCTA CAGCAGTTGG AGGATTGAGA TGCTATGAGA ATCCAAAGAA CAAGATTACT GCAGTACCTG
CCGAAGAAGA AGAAATCTGG GGTGCGACTT TTAAGGTGGA GGGATCAACA GTTCTTGCAG CCACAGAGTA CTAG

>Vigan.05G079300.01
MLAILSSSVV SPPEELVAAG SRTPSPKTSA AKLLTRFVES KASAVSLQVG EHVQLAYTHH SESPWHPRSF AVKDEIFCLF
EGALDNLGSL RQQYGLAKSA SEVILVIEAY KALRDRAPYP ANRVVCHLSG SFAFIVFDKS TSTVFVASDQ AGKVPLFWGI
TADGYVAFAD DADLLKGSCG KSLASFPQGC FYSTAVGGLR CYENPKNKIT AVPAEEEEIW GATFKVEGST VLAATEY*