GBrowse Details

Vigan.05G080000.01

Basic Information:
Name: Vigan.05G080000.01
Multiple alignment
Variant Information
Position: Chr05:6070431..6071784 (+ strand)
Length: 1354
Functional Information:
Description: Similar to uncharacterized LOC101209089. [XP_004164725.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.63,5.37,2.96,60.75,3.92,10.00,3.55,12.17
Automatic updates:
Name: NM_001249281 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526935 (LOC100526935), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251344 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500449 (LOC100500449), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6070431..6070990 (+ strand)
Length: 560
Type: five_prime_UTR
Position: Chr05:6070991..6071113 (+ strand)
Length: 123
Type: CDS
Position: Chr05:6071239..6071469 (+ strand)
Length: 231
Type: CDS
Position: Chr05:6071470..6071784 (+ strand)
Length: 315
Type: three_prime_UTR

>Vigan.05G080000.01 class=Sequence position=Chr05:6070431..6071784 (+ strand)
TTGCAAGTGG TTAAACAAGT AGATCCACCG ACCTATGGAA GTAATATTTG TCTGCTTGGT TTAACCTTAA CCACGCGCAA
CCAACAAGAA CATGAGATGG ATATAGTGAT AAGAATCTTT GGGACAAATA TTCATTTGTC GCCTATGCAT ATATGAAAGG
CTTTGAATAA TATGAGCCAT AAATTACTGT TTGATGAGAT GAGATGAGAT GAGATTAGAG AGAGAGATAA CCATGCCCAT
CCTCAACCAT GTGTATTCAA GATTGAATAT CTTTTTCCCC GAAACTTTCT GATGAAATAA GATAACATCA CTACAAATTT
CCATGATGCT TGTGCAAGGG TTCTGTAGGG CTTTGCCAGA TTGGCCAACT GTGATCATGA CCCCACCAAC CCACATGACC
ACCCCTTCTA TCTCAACTCA CCCTTTCTTT CCTTTTTCCT ATATAAACTT CTATTTCCTT AACTCATCCA AAAAATAAAC
AAAGAGATAT TACAAACTCT CGTACTTGGT TTCATACCCG ATTAGGAACC TCTTTTTCTT ATCACTCAGA TCAAACGGAC
ATGGAGGTTG CAGTTGAACT TGAAGATGAC CTATTTTTTG CAGATTTGAG CAAGGAAATT GCTCTCCTAA TCATGGATGA
AGATGAAGAC CGTCTTGATT CTTCTCCTCC TCAATCTCTT CAGGTTCTTT TACCACTTTC ATCTCTTCAA ACTTCAAACA
CATGCACCAC CATATTTTTC CCCTTTTTCT TCTTCTTCTT CCTCCTTCTC TGTGACAACA ATCTTAACAT GGTTAAACTA
ATTTTCAGGC TTTTTCTGAG GCAATTTATC CTCCTCCGCA GTTTGCTTTT CTCTATGAGC ATGCTTTGAG GAGAGAAAGC
AAAGGGACGG GTGTGTTTAT CCCCCAGGCA ACACAGCCAA GAAGGAAGCA GAGGAAAGGA AGGGCTGGTT CACATGCAAA
GCATCAAAAG CAGTCTCAGG ATACCAGAAC GGTTTCTCAA GTTCCTAACA AGAATTCTTT CAAATCCAGA AATGGCTAAG
GATCTGTGAA AACCTGCATA ATCTTACAAA TTCTACTGAT TAATTTCTTT GCCAAGTTTT AATAATTTGT GGATCTAATT
CTTTAGCCAG CCAATTATGA TATGGCTACT TAATTTGTAT TGTTTATATA TATTTATATA TAGGTTAGTG TAAATGGGAA
AACCATATAT ACCAAAATAT TAGACATGGT GTAGGAAGGT TCACCCAAGG TTTTGCTTCC TTCCTCTGCA GACAAGCATT
TCATTGTTAT CCTTTCTCGT TTCTTGTGAT AAGTTTGTCA TGGTTGCAAA GATCTTATTC TTCTTTTATT GCCA

>Vigan.05G080000.01
TTGCAAGTGG TTAAACAAGT AGATCCACCG ACCTATGGAA GTAATATTTG TCTGCTTGGT TTAACCTTAA CCACGCGCAA
CCAACAAGAA CATGAGATGG ATATAGTGAT AAGAATCTTT GGGACAAATA TTCATTTGTC GCCTATGCAT ATATGAAAGG
CTTTGAATAA TATGAGCCAT AAATTACTGT TTGATGAGAT GAGATGAGAT GAGATTAGAG AGAGAGATAA CCATGCCCAT
CCTCAACCAT GTGTATTCAA GATTGAATAT CTTTTTCCCC GAAACTTTCT GATGAAATAA GATAACATCA CTACAAATTT
CCATGATGCT TGTGCAAGGG TTCTGTAGGG CTTTGCCAGA TTGGCCAACT GTGATCATGA CCCCACCAAC CCACATGACC
ACCCCTTCTA TCTCAACTCA CCCTTTCTTT CCTTTTTCCT ATATAAACTT CTATTTCCTT AACTCATCCA AAAAATAAAC
AAAGAGATAT TACAAACTCT CGTACTTGGT TTCATACCCG ATTAGGAACC TCTTTTTCTT ATCACTCAGA TCAAACGGAC
ATGGAGGTTG CAGTTGAACT TGAAGATGAC CTATTTTTTG CAGATTTGAG CAAGGAAATT GCTCTCCTAA TCATGGATGA
AGATGAAGAC CGTCTTGATT CTTCTCCTCC TCAATCTCTT CAGGCTTTTT CTGAGGCAAT TTATCCTCCT CCGCAGTTTG
CTTTTCTCTA TGAGCATGCT TTGAGGAGAG AAAGCAAAGG GACGGGTGTG TTTATCCCCC AGGCAACACA GCCAAGAAGG
AAGCAGAGGA AAGGAAGGGC TGGTTCACAT GCAAAGCATC AAAAGCAGTC TCAGGATACC AGAACGGTTT CTCAAGTTCC
TAACAAGAAT TCTTTCAAAT CCAGAAATGG CTAAGGATCT GTGAAAACCT GCATAATCTT ACAAATTCTA CTGATTAATT
TCTTTGCCAA GTTTTAATAA TTTGTGGATC TAATTCTTTA GCCAGCCAAT TATGATATGG CTACTTAATT TGTATTGTTT
ATATATATTT ATATATAGGT TAGTGTAAAT GGGAAAACCA TATATACCAA AATATTAGAC ATGGTGTAGG AAGGTTCACC
CAAGGTTTTG CTTCCTTCCT CTGCAGACAA GCATTTCATT GTTATCCTTT CTCGTTTCTT GTGATAAGTT TGTCATGGTT
GCAAAGATCT TATTCTTCTT TTATTGCCA

>Vigan.05G080000.01
ATGGAGGTTG CAGTTGAACT TGAAGATGAC CTATTTTTTG CAGATTTGAG CAAGGAAATT GCTCTCCTAA TCATGGATGA
AGATGAAGAC CGTCTTGATT CTTCTCCTCC TCAATCTCTT CAGGCTTTTT CTGAGGCAAT TTATCCTCCT CCGCAGTTTG
CTTTTCTCTA TGAGCATGCT TTGAGGAGAG AAAGCAAAGG GACGGGTGTG TTTATCCCCC AGGCAACACA GCCAAGAAGG
AAGCAGAGGA AAGGAAGGGC TGGTTCACAT GCAAAGCATC AAAAGCAGTC TCAGGATACC AGAACGGTTT CTCAAGTTCC
TAACAAGAAT TCTTTCAAAT CCAGAAATGG CTAA

>Vigan.05G080000.01
MEVAVELEDD LFFADLSKEI ALLIMDEDED RLDSSPPQSL QAFSEAIYPP PQFAFLYEHA LRRESKGTGV FIPQATQPRR
KQRKGRAGSH AKHQKQSQDT RTVSQVPNKN SFKSRNG*