GBrowse Details

Vigan.05G080100.01

Basic Information:
Name: Vigan.05G080100.01
Multiple alignment
Variant Information
Position: Chr05:6075422..6077769 (+ strand)
Length: 2348
Functional Information:
Description: Similar to Peroxiredoxin. [T2DNE0, Phaseolus vulgaris]
GO: Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Thioredoxin-like fold (IPR012336)
Redoxin (IPR013740)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:54.80,50.87,55.01,75.36,61.88,149.64,26.95,32.70
Arabidopsis thaliana homolog: AT3G06050.1
Automatic updates:
Name: NM_001249816 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500096 (LOC100500096), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Name: NM_001250092 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative peroxiredoxin IIF (LOC100500627), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6075422..6075439 (+ strand)
Length: 18
Type: five_prime_UTR
Position: Chr05:6075440..6075643 (+ strand)
Length: 204
Type: CDS
Position: Chr05:6075747..6075776 (+ strand)
Length: 30
Type: CDS
Position: Chr05:6075976..6076134 (+ strand)
Length: 159
Type: CDS
Position: Chr05:6076830..6076924 (+ strand)
Length: 95
Type: CDS
Position: Chr05:6077333..6077438 (+ strand)
Length: 106
Type: CDS
Position: Chr05:6077439..6077769 (+ strand)
Length: 331
Type: three_prime_UTR


>Vigan.05G080100.01
GCCTGTGAGA ATTTTGTGAT GGCTTCCGCT ATGGTGAATC GAGGTGGTTG TCGGATCATG AAATCAGTGT CTGCAGTTCT
TGGTACGAGG TTTTACGCCA AGATTGCAAC TGGGACTGAC ATAGTCTCTG CCGCACCCAA TGTTTCTCTC CAGAAAGCTC
GTACCTGGGA CGAGGGACTT GATTCGAAAT TCTCCACCAC TCCTCTCAAA GACATCTTCA AGGACAAGAA AGTTGTCATC
TTTGGGCTCC CAGGTGCATA CACAGGTGTT TGTTCAAACA AACATGTTCC TCCTTACAAA GAGAATATTG ACAAGTTTAA
GGCCAAAGGG ATAGATTCTG TTATTTGTGT GGCTATTAAT GATCCGTATA CGATGAATGC GTGGGCTGAG AAGCTTCAAG
CCAAAGAGGC TATTGAGTTT TACGGGGACT TTGACGGGAG CTTTCACAAG AGTTTGGAGT TGGTTACTGA TCTCTCAGGT
GCATTACTTG GAACACGATC TGAAAGATGG TCAGCATATG TGGTAGATGG AAAGGTTAAG GCTCTTAATG TTGAAGAAGC
TCCATCTGAT GTTAAGGTTT CTGGTGCAGA CACCATTTTG GGACAGATTT AAAGTTCCTG TTGGTTTGTT TACATGTAGT
AAGTCTTCAA TAAAATGTAC CTAATACTTC CTGCTGATAC AAGGTTGTCA GTTTGGACCC TTCTTCCCTG CATGCATGGT
TATTAAGTTG AGTAAGTTTT TAGCATGCAT CACATATTAG CTGTAACTTT GGTATTTTAT CAATTCTATA TTTATTTATA
GTCTCAATTG TTTTTCTGTT GAAGTCTCCC TTGTGTTTAG TAACATCTTC ATTGCAACTT GAGTTCCTAA GTTATTTTAG
TGAGTCCTAT TTTATTTCTC AATTCACAAA ATCTTTATTT TGATTTGGAA AACTGAAACT GTA

>Vigan.05G080100.01
ATGGCTTCCG CTATGGTGAA TCGAGGTGGT TGTCGGATCA TGAAATCAGT GTCTGCAGTT CTTGGTACGA GGTTTTACGC
CAAGATTGCA ACTGGGACTG ACATAGTCTC TGCCGCACCC AATGTTTCTC TCCAGAAAGC TCGTACCTGG GACGAGGGAC
TTGATTCGAA ATTCTCCACC ACTCCTCTCA AAGACATCTT CAAGGACAAG AAAGTTGTCA TCTTTGGGCT CCCAGGTGCA
TACACAGGTG TTTGTTCAAA CAAACATGTT CCTCCTTACA AAGAGAATAT TGACAAGTTT AAGGCCAAAG GGATAGATTC
TGTTATTTGT GTGGCTATTA ATGATCCGTA TACGATGAAT GCGTGGGCTG AGAAGCTTCA AGCCAAAGAG GCTATTGAGT
TTTACGGGGA CTTTGACGGG AGCTTTCACA AGAGTTTGGA GTTGGTTACT GATCTCTCAG GTGCATTACT TGGAACACGA
TCTGAAAGAT GGTCAGCATA TGTGGTAGAT GGAAAGGTTA AGGCTCTTAA TGTTGAAGAA GCTCCATCTG ATGTTAAGGT
TTCTGGTGCA GACACCATTT TGGGACAGAT TTAA

>Vigan.05G080100.01
MASAMVNRGG CRIMKSVSAV LGTRFYAKIA TGTDIVSAAP NVSLQKARTW DEGLDSKFST TPLKDIFKDK KVVIFGLPGA
YTGVCSNKHV PPYKENIDKF KAKGIDSVIC VAINDPYTMN AWAEKLQAKE AIEFYGDFDG SFHKSLELVT DLSGALLGTR
SERWSAYVVD GKVKALNVEE APSDVKVSGA DTILGQI*