VIGGS:GBrowse

Vigan.05G081600.01

Basic Information:

Name:	Vigan.05G081600.01 Multiple alignment Variant Information
Position:	Chr05:6181430..6182622 (- strand)
Length:	1193

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MFG5, Glycine max]
InterPro:	Alpha crystallin/Hsp20 domain (IPR002068)
InterPro:	HSP20-like chaperone (IPR008978)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.38,1.79,2.24,47.68,0.35,11.95,12.57,2.11
Arabidopsis thaliana homolog:	AT4G21870.1

Automatic updates:

Name:	NM_001289235 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 15.4 kDa class V heat shock protein-like (LOC102663230), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:6181430..6181656 (- strand)
Length:	227
Type:	three_prime_UTR

Position:	Chr05:6181657..6181922 (- strand)
Length:	266
Type:	CDS

Position:	Chr05:6182322..6182463 (- strand)
Length:	142
Type:	CDS

Position:	Chr05:6182464..6182622 (- strand)
Length:	159
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G081600.01
CTGAAAGGCA GTGATCAGAC AGAGTCTGAC AAGTTGAATT CATGATTCCA ACTTGCCCAC GTATCTGTAA AAATAAACCA
ACCAAGTCCT ATATATCCTT TTTGACCAAC AGCACAAAAG CCAAATCAAC TGGAAAAGGA AACTCCAAAT TCCCTCACAA
TGGAATTCCC AGCATCTCAC TCCCTTCCCT GGCAATACTG CATCTCTTCT CACCTTCTCT TTCCCTACAA TTTCACCCCT
CAAAACTATG TCCACTGGAC AGAAACCCCT CAGTCTCACA TTTTTTCAGC TGACATCCCT GGTGTGAGAA AAGAGGAGCT
GAGAGTGGAG GTTGAGGATT CAAGGTACCT CATAATCAGA ACTGAAGCAG TGGATGAATC CACAGAACCT GCAAGGAAGT
TTGAGAGGAA GTTTAGGCTA CCTGGGAGGG TTGATCTCGA TGGCATCTCT GCTAGGTATG AAGATGGAGT TTTAACTGTT
ACAGTTCCGA GATCAATTAG AAGAGGTTTC TACATCGACC CTGCTGATGT GTCTGAGAAT TTGGAAGTTC TAGCCAAAGC
AGCTTGAATG AATGAATGAA TGAAGAAGGG TTCTTGTTCT AATTAGGAAG CTATACTGTT TAGTGCATGT GATTGGTTTC
TTCTTGATGA AACATTGGTT ATGTTGGTTT TGCATGATTT AGGCCATATT CCTCTTATCT CAGTGGCTAT TGTGTACAAA
AATGGTGTGA GTTATGATCC ATTTGTTCTC TGTTGTTTTC AAATGTGACA ACCAAGATTT TAAGTCGCAG ATAT

[show][hide][copy]CDS

>Vigan.05G081600.01
ATGGAATTCC CAGCATCTCA CTCCCTTCCC TGGCAATACT GCATCTCTTC TCACCTTCTC TTTCCCTACA ATTTCACCCC
TCAAAACTAT GTCCACTGGA CAGAAACCCC TCAGTCTCAC ATTTTTTCAG CTGACATCCC TGGTGTGAGA AAAGAGGAGC
TGAGAGTGGA GGTTGAGGAT TCAAGGTACC TCATAATCAG AACTGAAGCA GTGGATGAAT CCACAGAACC TGCAAGGAAG
TTTGAGAGGA AGTTTAGGCT ACCTGGGAGG GTTGATCTCG ATGGCATCTC TGCTAGGTAT GAAGATGGAG TTTTAACTGT
TACAGTTCCG AGATCAATTA GAAGAGGTTT CTACATCGAC CCTGCTGATG TGTCTGAGAA TTTGGAAGTT CTAGCCAAAG
CAGCTTGA

[show][hide][copy]PROTEIN

>Vigan.05G081600.01
MEFPASHSLP WQYCISSHLL FPYNFTPQNY VHWTETPQSH IFSADIPGVR KEELRVEVED SRYLIIRTEA VDESTEPARK
FERKFRLPGR VDLDGISARY EDGVLTVTVP RSIRRGFYID PADVSENLEV LAKAA*