GBrowse Details

Vigan.05G083700.01

Basic Information:
Name: Vigan.05G083700.01
Multiple alignment
Variant Information
Position: Chr05:6387836..6393683 (+ strand)
Length: 5848
Functional Information:
Description: Similar to Uncharacterized protein. [I1MH24, Glycine max]
InterPro: Fbxo7/PI31 domain (IPR021625)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:262.25,234.90,31.17,47.89,35.95,49.42,58.36,45.01
Arabidopsis thaliana homolog: AT3G53970.1
Automatic updates:
Name: NM_001254408 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable proteasome inhibitor-like (LOC100814792), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:6387836..6388061 (+ strand)
Length: 226
Type: five_prime_UTR
Position: Chr05:6388062..6388236 (+ strand)
Length: 175
Type: CDS
Position: Chr05:6388344..6388515 (+ strand)
Length: 172
Type: CDS
Position: Chr05:6389669..6389809 (+ strand)
Length: 141
Type: CDS
Position: Chr05:6390301..6390381 (+ strand)
Length: 81
Type: CDS
Position: Chr05:6391710..6391787 (+ strand)
Length: 78
Type: CDS
Position: Chr05:6391892..6391926 (+ strand)
Length: 35
Type: CDS
Position: Chr05:6392021..6392084 (+ strand)
Length: 64
Type: CDS
Position: Chr05:6392882..6392959 (+ strand)
Length: 78
Type: CDS
Position: Chr05:6393458..6393536 (+ strand)
Length: 79
Type: CDS
Position: Chr05:6393537..6393683 (+ strand)
Length: 147
Type: three_prime_UTR


>Vigan.05G083700.01
GAATCACAGG GCACGCAACC ACAAAAAAAA ATGTGATTTA AGAAAGTCTT ATAAGATTTT TCTTTTTTTT TTTTATTGAA
AATACTGGAA GTCTCTCCAA TTCTTCCGAA GCACGTCTAA ACCCTCATCC ACCCCATTTT AATTTGATAG TAATTGAACT
ATTCAGTTTC AAAAGTTTTC TGAATTACAA CAGAAACACA AGAATTTGCC ATTGTTGAAA ACGTGGATGG CGAGTGAAAA
GTCGGTGCTT GCCGTGATCA GGGCCGCGAG GCCAACCTTC CGCAATCGAA ACGATAAAAT CGCCTTTGCC ATTCACTCCT
CCTTCCTAGC CTCCGGCTAT GTCCTTACCG CCACGGGTCC CCAGGCTCTC TCCGACAATG TGTTTTCTGA CCCATCAAAT
GATGAAGTAT CCGTTGATAA CTGGAACGAG CTAAACGAAG AGTACGCGTT CGTTTACGCG AATCCAGAAA AAGGGTCGGA
GAAAGTGCTT GTCAAGTGCC TTGTCATGAA TGACAAATTG CTAGTTCATG TTTTGTCTCA AGGGTCGTCC GAGCCTTTAA
GCCTCGAGAT TGATGTTGGA GACTATGCCG GAGAGGATGG GGGCAGCAAT TATGCTCAGC AGTTCAAGAA TTTGGTTAAG
CTTGTGAAGA GAATCGATGG GGACATCTTG TCTAAATTAG ATGGTTCTGC TAATGCCAGC TCATCAAGTA GAAGCTCAGA
AACAAGGGAC AGAACTAGAC AAGAGATACC TGAGCCTGTT GGTGTATTTG GTGAACCTGC TGGTCCTCCA ACTCAGATTA
TTTTCCCTTC AGTTCCCATT GGTTCTGGTA GTGATCTTGT TCCTGGGCCG CCTGCTGGAG TGCTTCCTTC AAGGGGTGGT
CATGGCATTG GTGGGAGCAT GCATTTAGGG CCTAATGACC CCATGTGGTT TGGTGGTATT GGTCGAGATC CTGCTTTTCC
TGGAGGAATG CCGGGTCTTC CTCCTGGCGC GCGTTTTGAT CCATATGGTC CTCCTGGTGT TCCTGGTTTT GAACCCAACC
GATTTGCAAG GAATCCTAGG AGACCAGGAT ATGACGGTCA TCCAGATCTG CAACATTTTC GAAGAGACGC TGATTCAGAC
TACATATAGA TATATATTAT ATTTTAGTTG TCGCAATATG GTCGGGTTCT ATCTACGAAC AAGTTGTGTC TAGTCAATCT
CCTAAAACAA TTTCAGCAGA CACTATACTC TGGATTATTC TTCATGCGGA CTTTCTTTCA GCGCTATTAG CGTTAT

>Vigan.05G083700.01
ATGGCGAGTG AAAAGTCGGT GCTTGCCGTG ATCAGGGCCG CGAGGCCAAC CTTCCGCAAT CGAAACGATA AAATCGCCTT
TGCCATTCAC TCCTCCTTCC TAGCCTCCGG CTATGTCCTT ACCGCCACGG GTCCCCAGGC TCTCTCCGAC AATGTGTTTT
CTGACCCATC AAATGATGAA GTATCCGTTG ATAACTGGAA CGAGCTAAAC GAAGAGTACG CGTTCGTTTA CGCGAATCCA
GAAAAAGGGT CGGAGAAAGT GCTTGTCAAG TGCCTTGTCA TGAATGACAA ATTGCTAGTT CATGTTTTGT CTCAAGGGTC
GTCCGAGCCT TTAAGCCTCG AGATTGATGT TGGAGACTAT GCCGGAGAGG ATGGGGGCAG CAATTATGCT CAGCAGTTCA
AGAATTTGGT TAAGCTTGTG AAGAGAATCG ATGGGGACAT CTTGTCTAAA TTAGATGGTT CTGCTAATGC CAGCTCATCA
AGTAGAAGCT CAGAAACAAG GGACAGAACT AGACAAGAGA TACCTGAGCC TGTTGGTGTA TTTGGTGAAC CTGCTGGTCC
TCCAACTCAG ATTATTTTCC CTTCAGTTCC CATTGGTTCT GGTAGTGATC TTGTTCCTGG GCCGCCTGCT GGAGTGCTTC
CTTCAAGGGG TGGTCATGGC ATTGGTGGGA GCATGCATTT AGGGCCTAAT GACCCCATGT GGTTTGGTGG TATTGGTCGA
GATCCTGCTT TTCCTGGAGG AATGCCGGGT CTTCCTCCTG GCGCGCGTTT TGATCCATAT GGTCCTCCTG GTGTTCCTGG
TTTTGAACCC AACCGATTTG CAAGGAATCC TAGGAGACCA GGATATGACG GTCATCCAGA TCTGCAACAT TTTCGAAGAG
ACGCTGATTC AGACTACATA TAG

>Vigan.05G083700.01
MASEKSVLAV IRAARPTFRN RNDKIAFAIH SSFLASGYVL TATGPQALSD NVFSDPSNDE VSVDNWNELN EEYAFVYANP
EKGSEKVLVK CLVMNDKLLV HVLSQGSSEP LSLEIDVGDY AGEDGGSNYA QQFKNLVKLV KRIDGDILSK LDGSANASSS
SRSSETRDRT RQEIPEPVGV FGEPAGPPTQ IIFPSVPIGS GSDLVPGPPA GVLPSRGGHG IGGSMHLGPN DPMWFGGIGR
DPAFPGGMPG LPPGARFDPY GPPGVPGFEP NRFARNPRRP GYDGHPDLQH FRRDADSDYI *