GBrowse Details

Vigan.05G084900.01

Basic Information:
Name: Vigan.05G084900.01
Multiple alignment
Variant Information
Position: Chr05:6469695..6472965 (+ strand)
Length: 3271
Functional Information:
Description: Similar to Uncharacterized protein. [I1KZU3, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Mpv17/PMP22 (IPR007248)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:61.04,21.07,14.82,47.14,22.53,39.61,119.42,16.27
Arabidopsis thaliana homolog: AT4G04470.1
Automatic updates:
Name: NM_001250875 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499909 (LOC100499909), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6469695..6469814 (+ strand)
Length: 120
Type: five_prime_UTR
Position: Chr05:6469815..6469886 (+ strand)
Length: 72
Type: CDS
Position: Chr05:6469984..6470082 (+ strand)
Length: 99
Type: CDS
Position: Chr05:6471545..6471646 (+ strand)
Length: 102
Type: CDS
Position: Chr05:6471955..6472030 (+ strand)
Length: 76
Type: CDS
Position: Chr05:6472292..6472362 (+ strand)
Length: 71
Type: CDS
Position: Chr05:6472465..6472550 (+ strand)
Length: 86
Type: CDS
Position: Chr05:6472666..6472717 (+ strand)
Length: 52
Type: CDS
Position: Chr05:6472718..6472965 (+ strand)
Length: 248
Type: three_prime_UTR


>Vigan.05G084900.01
TAAGAACATG GTGAATGTCT TGTCTCCAAG ATATTTTGGG GCAACAACCA TAATAGATAC ACAGAAAAGT GACGGACCCA
GACGCAGTTA GCTGCTATTC AGTCAAAGGG TGGGAGCAAG ATGGGTTCTT TGGCAAAGAA GGGTCTCAAC AATTACGTCA
AACAGCTCCA AGAAAACCCT TTGAGAACAA AGGTAATCAC TGCAGGTGTA GTATCAGCGA TTAGCGATAT TGTGTCTCAG
AAACTTTCTG GGATACAGAA ACTTCAACTG AAACGTCTTC TTCTCAAAGT CCTTTTTGGA GCCGGGTATA TTGGACCCTT
TGGACACTTT TTTCATTTAA TACTGGACAA AATATTCAAA GGAAAGAGAG ATACAAAAAC TGTGGCCAAG AAGGTTCTGA
TTGAACAGTG TACATCTTCT CCTTTGAACA ATCTGCTTTT CATGATTTAC TACGGATTAG TTGTTGAAGG CCAACCTTGG
GTGAATGTGA AAGCTAAAGT TAGGAAGGAT TATCCATCAG TGCAGTACAC TGCTTGGACG ATCTCGCCAA TTGTGGGGTG
GATAAATCAT AAATTCTTGC CTCTTCATTT CCGTGTTGTT TTCCACAGCG TAGCAGCATT TTTCTGGTCA ATATTCTTAA
ATCTTCGTGC ACGATCTCTG GCGTTGACTA AAGCCTGAAG CAAAGAAGAG TACTGATCAT AGTCTTTGAA GTAGATGCTA
CTGTTTGTTG GGAGACTGTT AATCTTTCCA GAGCGGAATA TAGAAGTTTA GAATATAGAT GCTTTTGGAC AAGGGTTGAT
TGATTTGGTT TTCAACTGAA CTGATTGTGG TTAAGATTGA TTTTAAAGTT GTGTGATTTA TGTTTGAATG TTTTCATTAT
GAAAACAAGT TAGTAATAAA AATTGGTATA AATTTGTTAT TCAATG

>Vigan.05G084900.01
ATGGGTTCTT TGGCAAAGAA GGGTCTCAAC AATTACGTCA AACAGCTCCA AGAAAACCCT TTGAGAACAA AGGTAATCAC
TGCAGGTGTA GTATCAGCGA TTAGCGATAT TGTGTCTCAG AAACTTTCTG GGATACAGAA ACTTCAACTG AAACGTCTTC
TTCTCAAAGT CCTTTTTGGA GCCGGGTATA TTGGACCCTT TGGACACTTT TTTCATTTAA TACTGGACAA AATATTCAAA
GGAAAGAGAG ATACAAAAAC TGTGGCCAAG AAGGTTCTGA TTGAACAGTG TACATCTTCT CCTTTGAACA ATCTGCTTTT
CATGATTTAC TACGGATTAG TTGTTGAAGG CCAACCTTGG GTGAATGTGA AAGCTAAAGT TAGGAAGGAT TATCCATCAG
TGCAGTACAC TGCTTGGACG ATCTCGCCAA TTGTGGGGTG GATAAATCAT AAATTCTTGC CTCTTCATTT CCGTGTTGTT
TTCCACAGCG TAGCAGCATT TTTCTGGTCA ATATTCTTAA ATCTTCGTGC ACGATCTCTG GCGTTGACTA AAGCCTGA

>Vigan.05G084900.01
MGSLAKKGLN NYVKQLQENP LRTKVITAGV VSAISDIVSQ KLSGIQKLQL KRLLLKVLFG AGYIGPFGHF FHLILDKIFK
GKRDTKTVAK KVLIEQCTSS PLNNLLFMIY YGLVVEGQPW VNVKAKVRKD YPSVQYTAWT ISPIVGWINH KFLPLHFRVV
FHSVAAFFWS IFLNLRARSL ALTKA*