GBrowse Details

Vigan.05G086000.01

Basic Information:
Name: Vigan.05G086000.01
Multiple alignment
Variant Information
Position: Chr05:6548471..6552128 (- strand)
Length: 3658
Functional Information:
Description: Similar to cleavage and polyadenylation specificity factor subunit 5-like. [XP_004496579.1, Cicer arietinum]
GO: Biological Process: mRNA polyadenylation (GO:0006378)
Cellular Component: mRNA cleavage factor complex (GO:0005849)
Molecular Function: mRNA binding (GO:0003729)
Molecular Function: hydrolase activity (GO:0016787)
InterPro: NUDIX hydrolase domain (IPR000086)
NUDIX hydrolase domain-like (IPR015797)
Cleavage/polyadenylation specificity factor subunit 5 (IPR016706)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.86,10.42,19.82,23.85,25.71,17.19,30.91,14.02
Arabidopsis thaliana homolog: AT4G25550.1
Automatic updates:
Name: NM_001250112 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306068 (LOC100306068), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6548471..6549239 (- strand)
Length: 769
Type: three_prime_UTR
Position: Chr05:6549240..6549311 (- strand)
Length: 72
Type: CDS
Position: Chr05:6549638..6549748 (- strand)
Length: 111
Type: CDS
Position: Chr05:6549911..6549997 (- strand)
Length: 87
Type: CDS
Position: Chr05:6550113..6550186 (- strand)
Length: 74
Type: CDS
Position: Chr05:6550286..6550379 (- strand)
Length: 94
Type: CDS
Position: Chr05:6551488..6551533 (- strand)
Length: 46
Type: CDS
Position: Chr05:6551780..6551898 (- strand)
Length: 119
Type: CDS
Position: Chr05:6551899..6552128 (- strand)
Length: 230
Type: five_prime_UTR


>Vigan.05G086000.01
TGCGAGTTTG GGAGGGAGGG GATAGGGCCC ATGACCCGGT GTTGAGATTT AACAGTACGA GAGTTGACAA GAGTAAAATG
AACATCCAAA TCCTAATCTC AAAAATATTA CAGACCTAAT TCAAAAGCGC AATCTAGCCA AGTCTTCTGT CTCTTTTTCT
TTTCTTCAAT CTGTGTCTTC TCACCATTCA GTTCAATTCG ATTCTAATCG AAAAGAAAAG AGAAGAAAAA ATGGTGTCGT
CGCAAGTTGT GAATACATAC CCGTTGTCGA GCTACACGTT TGGCACAAAG GAGCCCAAGA TGGAGAAGGA CACCTCCGTC
GCCGATCGTC TCGCTCGCAT GAAAGTCAAC TATATGAAGG AGGGAATGAG GACCAGTGTG GAAGGGATTT TACTGGTTCA
AGAACATAAT CATCCACATA TACTTCTTCT GCAAATTGGA AACACATTTT GCAAACTCCC GGGTGGTCGT CTCAAACCAG
GAGAGAATGA AATTGAGGGC TTGAAGAGAA AGTTGACTAG CAAGCTTGGT GCTAATTCAC CAGCTCTTGT GCCTGACTGG
CAGATAGGTG AGTGTGTTGC AATCTGGTGG AGGCCAAATT TTGAAACCAT AATGTATCCA TACTGCCCTC CTCATATCAC
AAAACCCAAG GAGTGCAAAA AACTTTTCCT TGTTCACTTA TCTGAAAGGG AATACTTTGC AGTGCCCAAA AATTTAAAAC
TACTTGCTGT GCCATTGTTT GAACTCTATG ACAATGTTCA GAGATACGGT CCAGTTATAT CCACCATTCC TCAGCAGCTA
TCCAGATTCC AGTTTAAAAT GATCACTAAT TGAACGTAAA TTTGAAGCTC ACATGCTGAT AAATTACTAC TGTCTTTTTT
ATTTTGGTAA CCAGGACTGC CATTATCATT GTTGCGTAGA GAGAACTGAG TTTTGAAGTG AGTTTCTGAG TAGAATAGTT
ATTTAGTGAC ATGCTTTGTC TGTATTTATT CCTTGCACTA TGGGTAGACC TCGATTATCA ACCATCAACC GAAAAGATGC
AATCAAGTAT TCAACTTGTA GGTTTATGCC TAATACCCCA GTAGAAATCA AGGTGATAAA GAAGTGCCTT CTGTTCATGT
CTGTTGCTTC TGCCCTCCTC AGGTTGCCAA TATTGGTGTG GAAAGGGGCA TTGGTTTTCG TTGCCAGTTT TTCTGGTGAA
AGGCATTGAA TGGCAAAAAG TATGCATTTG AAATTCAAAT ATAATCCTCG TGGGAAAATT TATACAACAA TGACTAAAAT
TTAAATCCCT CTTTGACTTA TTATAGACAG TTTTAGCATA TCCTATTTCC GAAGTTGCTG CTTGTGCACG CTTGGTGAAG
TAGCACTTGA TTCAAATATT GATAGTTCAT TTTCTTCTTT ATAGTTTCCT TCACCTATTA AAGTCCAAGG GCCTGGTGTG
ATTTCTTTTA TTGATAATAA CGAGTAAACG TCAATAAGAC CGAAAATAGA AAATAGTATT AGAGGTGGAA GGAAGCATTC
CCAATGACAA TGTACATAAT AGTAGTGCTG TATTTTGGGA AAAAGTTGTA ATTATTTTTA TATATATGGC CATGGATTGG
AT

>Vigan.05G086000.01
ATGGTGTCGT CGCAAGTTGT GAATACATAC CCGTTGTCGA GCTACACGTT TGGCACAAAG GAGCCCAAGA TGGAGAAGGA
CACCTCCGTC GCCGATCGTC TCGCTCGCAT GAAAGTCAAC TATATGAAGG AGGGAATGAG GACCAGTGTG GAAGGGATTT
TACTGGTTCA AGAACATAAT CATCCACATA TACTTCTTCT GCAAATTGGA AACACATTTT GCAAACTCCC GGGTGGTCGT
CTCAAACCAG GAGAGAATGA AATTGAGGGC TTGAAGAGAA AGTTGACTAG CAAGCTTGGT GCTAATTCAC CAGCTCTTGT
GCCTGACTGG CAGATAGGTG AGTGTGTTGC AATCTGGTGG AGGCCAAATT TTGAAACCAT AATGTATCCA TACTGCCCTC
CTCATATCAC AAAACCCAAG GAGTGCAAAA AACTTTTCCT TGTTCACTTA TCTGAAAGGG AATACTTTGC AGTGCCCAAA
AATTTAAAAC TACTTGCTGT GCCATTGTTT GAACTCTATG ACAATGTTCA GAGATACGGT CCAGTTATAT CCACCATTCC
TCAGCAGCTA TCCAGATTCC AGTTTAAAAT GATCACTAAT TGA

>Vigan.05G086000.01
MVSSQVVNTY PLSSYTFGTK EPKMEKDTSV ADRLARMKVN YMKEGMRTSV EGILLVQEHN HPHILLLQIG NTFCKLPGGR
LKPGENEIEG LKRKLTSKLG ANSPALVPDW QIGECVAIWW RPNFETIMYP YCPPHITKPK ECKKLFLVHL SEREYFAVPK
NLKLLAVPLF ELYDNVQRYG PVISTIPQQL SRFQFKMITN *