GBrowse Details

Vigan.05G086400.01

Basic Information:
Name: Vigan.05G086400.01
Multiple alignment
Variant Information
Position: Chr05:6569584..6572468 (+ strand)
Length: 2885
Functional Information:
Description: Similar to proline synthase co-transcribed bacterial homolog protein-like. [XP_004486181.1, Cicer arietinum]
InterPro: Alanine racemase, N-terminal (IPR001608)
Uncharacterised protein family UPF0001 (IPR011078)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.41,2.28,18.59,19.53,179.03,49.66,41.08,15.72
Automatic updates:
Name: NM_001250781 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527295 (LOC100527295), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6569584..6569664 (+ strand)
Length: 81
Type: five_prime_UTR
Position: Chr05:6569665..6569871 (+ strand)
Length: 207
Type: CDS
Position: Chr05:6569945..6570011 (+ strand)
Length: 67
Type: CDS
Position: Chr05:6570323..6570369 (+ strand)
Length: 47
Type: CDS
Position: Chr05:6571139..6571226 (+ strand)
Length: 88
Type: CDS
Position: Chr05:6571598..6571728 (+ strand)
Length: 131
Type: CDS
Position: Chr05:6571836..6571934 (+ strand)
Length: 99
Type: CDS
Position: Chr05:6572032..6572112 (+ strand)
Length: 81
Type: CDS
Position: Chr05:6572113..6572468 (+ strand)
Length: 356
Type: three_prime_UTR


>Vigan.05G086400.01
GGGCCCACGT CCAATATTCC AAATCACCAT GTCCTTTTAC ATACGCCGAA GAACGGTGGT GAGCGAGAAG GGCCAAGGCC
AATGACATCA TCAGCAGCGC CTTCGCTGAA AGCGGTACTG GACCGCGTCC AAGGGGCTAC TGAGCGCTCT GGCCGGAATT
TACAAGAGAT CCGTGTTGTG GCGGCTAGCA AGACAAAGTC AGTTTCTGCT CTCCGTCAGG TATACGACGC GGGCCATAGA
TTCTTCGGCG AGAACTACGT TCAGGAAATC CTTCAAAAAG CTCCTCAGCT TCCCGATGAC ATTGAGTGGC ATCTCATTGG
CAATTTGCAG AGTAACAAAG TCAAGCCTCT TATCGCTGGT GTTCCCAACC TTGCTTGTGT AGAAACTGTG GATGACGAGA
AGATAGCAAA TCTTCTCGAT CGTGCTGTAG CGACTGTTGG CAGGAAACCG TTAAAGGTTT TTGTTCAAGT GAATACGAGC
GGAGAAATCT CCAAATTTGG TGTTGAACCA GCTGTGTGTG TGGATCTTGT AAAGCACATC ACAAACTGCC CAAACCTTGA
GTTTTCTGGT CTAATGACAA TTGGCATGCT GGATTATTCA TCCACCCCTG AAAATTTTAA GATGTTGTCC AATTGCAGAA
GTGAAGTTTG TAAAGCACTT GGAATACCAG AAACGCAATG TGAGCTATCG ATGGGCATGA CTGGAGACTT TGAGCAAGCT
ATCGAGATGG GAAGTACAAA TGTTAGGATT GGGACTGCCA TATTTGGAGC CAGAGAATAT CCAACGAAAG ACGAGAAGTA
GCTATCCTAA TTTTGCAGTC TCTTTGTGGG TTGGTATATT GGTGCTGACA TTCACATATC AAACTCAGAA CAGCACGAGC
AAATTATTCA AGCTATAACT TAGTATATCC GTGAACATGA ATTTGTATTC GGAATAATCT TCTAGATTGA AGGCTGTATA
CATTTTCTGT CAAACATAAG AACCAACCTA TTCAGCTGAA GCTGAACCAA GATAATTTGA AAGAATAATG ATGTGCAGCA
CCGAAAATAA TTATATGAAA AATAGCACAT CTGACGAGTT ACATTTGTAT TAGAAGTAAC TTTGTTCTCT TATCTAAATG
GTCATACTTG TTTTTTACTA ATGAATTTGA ATTCCCG

>Vigan.05G086400.01
ATGACATCAT CAGCAGCGCC TTCGCTGAAA GCGGTACTGG ACCGCGTCCA AGGGGCTACT GAGCGCTCTG GCCGGAATTT
ACAAGAGATC CGTGTTGTGG CGGCTAGCAA GACAAAGTCA GTTTCTGCTC TCCGTCAGGT ATACGACGCG GGCCATAGAT
TCTTCGGCGA GAACTACGTT CAGGAAATCC TTCAAAAAGC TCCTCAGCTT CCCGATGACA TTGAGTGGCA TCTCATTGGC
AATTTGCAGA GTAACAAAGT CAAGCCTCTT ATCGCTGGTG TTCCCAACCT TGCTTGTGTA GAAACTGTGG ATGACGAGAA
GATAGCAAAT CTTCTCGATC GTGCTGTAGC GACTGTTGGC AGGAAACCGT TAAAGGTTTT TGTTCAAGTG AATACGAGCG
GAGAAATCTC CAAATTTGGT GTTGAACCAG CTGTGTGTGT GGATCTTGTA AAGCACATCA CAAACTGCCC AAACCTTGAG
TTTTCTGGTC TAATGACAAT TGGCATGCTG GATTATTCAT CCACCCCTGA AAATTTTAAG ATGTTGTCCA ATTGCAGAAG
TGAAGTTTGT AAAGCACTTG GAATACCAGA AACGCAATGT GAGCTATCGA TGGGCATGAC TGGAGACTTT GAGCAAGCTA
TCGAGATGGG AAGTACAAAT GTTAGGATTG GGACTGCCAT ATTTGGAGCC AGAGAATATC CAACGAAAGA CGAGAAGTAG


>Vigan.05G086400.01
MTSSAAPSLK AVLDRVQGAT ERSGRNLQEI RVVAASKTKS VSALRQVYDA GHRFFGENYV QEILQKAPQL PDDIEWHLIG
NLQSNKVKPL IAGVPNLACV ETVDDEKIAN LLDRAVATVG RKPLKVFVQV NTSGEISKFG VEPAVCVDLV KHITNCPNLE
FSGLMTIGML DYSSTPENFK MLSNCRSEVC KALGIPETQC ELSMGMTGDF EQAIEMGSTN VRIGTAIFGA REYPTKDEK*