GBrowse Details

Vigan.05G087100.01

Basic Information:
Name: Vigan.05G087100.01
Multiple alignment
Variant Information
Position: Chr05:6619701..6621423 (+ strand)
Length: 1723
Functional Information:
Description: Similar to Chaperonin-like RbcX protein. [XP_007026166.1, Theobroma cacao]
InterPro: Chaperonin-like RbcX (IPR003435)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.51,2.06,0.00,36.55,0.93,1.69,1.60,0.27
Arabidopsis thaliana homolog: AT4G04330.1
Automatic updates:
Name: NM_001255363 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100803175 (LOC100803175), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6619701..6619802 (+ strand)
Length: 102
Type: five_prime_UTR
Position: Chr05:6619803..6619950 (+ strand)
Length: 148
Type: CDS
Position: Chr05:6620128..6620222 (+ strand)
Length: 95
Type: CDS
Position: Chr05:6620492..6620609 (+ strand)
Length: 118
Type: CDS
Position: Chr05:6620739..6620755 (+ strand)
Length: 17
Type: CDS
Position: Chr05:6620827..6620889 (+ strand)
Length: 63
Type: CDS
Position: Chr05:6620987..6621061 (+ strand)
Length: 75
Type: CDS
Position: Chr05:6621062..6621423 (+ strand)
Length: 362
Type: three_prime_UTR


>Vigan.05G087100.01
TGATTACAAC CTCACCATGG TGTTCACATG CTTAAATTGG CATCATAAAA ATTAAGGCCT TTTTCCAATA TACATAACAC
AAATTTTTAA CACTGCTTAG CCATGGAATC TTCTGCAACT CTACCTCTTT CTCAGCTTCC TTTTGTGTAC CCTGCAACAC
CCAGGAGTAA CAAAGCTTAC CCCTTTTGGC CTTGCAAGCG AAGAAGCTCG CTGCCAACAC GCTTACGCTG CAACAAGATG
TATGTACCAG GATTTGGAGA AGCATCACCA GAAGCAAAGG CGGCTAAACA CCTCCACAAT TTCTTCACCT ACGTAGCTGT
GAAGATTGTT GCTGCTCAAC TTGAGAGCTA CAATCCTGAG GCATATGAGG AGCTGATTGA ATTTCTTGGT AGACACTCGT
TGAATGATGG TGACAAGTTT TGTGCCGCCA TGTTCAGAGA ATCATCAAGA CATAAGAACT TAGCCCTACG CATAATGGAG
GTGAGATCAG CATACTGCAA AAATGATTTT GAATGGGACA ACTTGAAGCG CCTAGCCCTC AAGATGGTCA CAGAATCTAA
CACGAGGCTC ATGACGGAAT ATGTCTTAGA AACCAGTCAT GTTGAAAGTG AGAAGTGAAT AGTCTTCAAC CAAAGTATTA
GCCCCTTTAT TCCTTCCGAT CGAAGAGGAG ATAGGGCAAT ATACCTATTT ATATGTACAG AAAGAACTGA CACGTTTATC
AATCAATTTT ATACTCCAGC ATTAGCAAGG TTATGATTAA AAAAACAGTT AGATCATAGA ATGGTTAGAC AAATTCGATA
CACAAATTGA TAATCAACAG ATATATTGTT TGGTTGTGTT TAAAAGCTTC AAAATTTTAA ATACACATTT GACGCATGGA
ATGTGTGAAA TCCCTTTCGA TTTAAGTCAA ACCGTTTATA GAAACACACT TTTACTTGGG AGTAAAAGAA TTGTCTGGTC
CAAATATGTA AACATTCAAG 

>Vigan.05G087100.01
ATGGAATCTT CTGCAACTCT ACCTCTTTCT CAGCTTCCTT TTGTGTACCC TGCAACACCC AGGAGTAACA AAGCTTACCC
CTTTTGGCCT TGCAAGCGAA GAAGCTCGCT GCCAACACGC TTACGCTGCA ACAAGATGTA TGTACCAGGA TTTGGAGAAG
CATCACCAGA AGCAAAGGCG GCTAAACACC TCCACAATTT CTTCACCTAC GTAGCTGTGA AGATTGTTGC TGCTCAACTT
GAGAGCTACA ATCCTGAGGC ATATGAGGAG CTGATTGAAT TTCTTGGTAG ACACTCGTTG AATGATGGTG ACAAGTTTTG
TGCCGCCATG TTCAGAGAAT CATCAAGACA TAAGAACTTA GCCCTACGCA TAATGGAGGT GAGATCAGCA TACTGCAAAA
ATGATTTTGA ATGGGACAAC TTGAAGCGCC TAGCCCTCAA GATGGTCACA GAATCTAACA CGAGGCTCAT GACGGAATAT
GTCTTAGAAA CCAGTCATGT TGAAAGTGAG AAGTGA

>Vigan.05G087100.01
MESSATLPLS QLPFVYPATP RSNKAYPFWP CKRRSSLPTR LRCNKMYVPG FGEASPEAKA AKHLHNFFTY VAVKIVAAQL
ESYNPEAYEE LIEFLGRHSL NDGDKFCAAM FRESSRHKNL ALRIMEVRSA YCKNDFEWDN LKRLALKMVT ESNTRLMTEY
VLETSHVESE K*