GBrowse Details

Vigan.05G087400.01

Basic Information:
Name: Vigan.05G087400.01
Multiple alignment
Variant Information
Position: Chr05:6652357..6657142 (- strand)
Length: 4786
Functional Information:
Description: Similar to 50S ribosomal protein L4. [V5N940, Phaseolus vulgaris]
GO: Biological Process: translation (GO:0006412)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L4/L1e (IPR002136)
Ribosomal protein L4/L1e, bacterial-type (IPR013005)
Ribosomal protein L4 domain (IPR023574)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.11,47.33,15.79,10.35,24.70,20.06,24.59,12.76
Arabidopsis thaliana homolog: AT2G20060.1
Automatic updates:
Name: NM_001255527 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L4-like (LOC100804238), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6652357..6652672 (- strand)
Length: 316
Type: three_prime_UTR
Position: Chr05:6652673..6652774 (- strand)
Length: 102
Type: CDS
Position: Chr05:6653550..6653723 (- strand)
Length: 174
Type: CDS
Position: Chr05:6654732..6654851 (- strand)
Length: 120
Type: CDS
Position: Chr05:6654960..6655067 (- strand)
Length: 108
Type: CDS
Position: Chr05:6655414..6655562 (- strand)
Length: 149
Type: CDS
Position: Chr05:6656319..6656436 (- strand)
Length: 118
Type: CDS
Position: Chr05:6656575..6656627 (- strand)
Length: 53
Type: CDS
Position: Chr05:6656747..6656864 (- strand)
Length: 118
Type: CDS
Position: Chr05:6656865..6657142 (- strand)
Length: 278
Type: five_prime_UTR


>Vigan.05G087400.01
CTTTATTTGC TCTAGGTTGT AGTGTAGTTC GATACTTGTT TCATTTTTCA CACCGTTTTG TAAATTGATG AGGGGCCCTT
CCCTAATGAA AATACTGTGG TATAAATGGT GTAGTGGTTG AATTTGCGAA TTTAAGTTGC GGCGTGCAAT GCATTTGATT
AAACGTCTCG CTTCCTTCTC TGCTTTAGTT TGAGCCCTTT TAGTTGCATT CTTACCGTTG CTTCTGCTCT GAATTTCAAA
TGGGAAGGTG CAATCTATAG TAGATTGTTT CGTCAGTTAT GGCGGCGTTA ATTTCCAAAA GGCTACTACG TTGTTCTTCT
GGGTCCTTGC CTTCACTGGG ACGATGCTAC TTTAATTCAC CTAATGCTGC GTCTGCCCCT TTTTATCAAT CACGTTATGT
ATACAGCAGA TTATCTGGGG AAAGACTCCT TTCTGCAGAA TCTTGTTTGG TCAGATCAAT GATCCAACAA TTTTCTACTT
CTATTTTAAC TCCTGTGCCT GATGAGAGCG CATTTCCGTC CGATTTATTG TCCAAGAAGG CTCTAGCAAC ATCTGAGCGT
ACTATAGGGC TTTGCCAGGA TCTTTTAATT CCAGTTACCA ACTTTCATAA TGAAGACAAG GGCTTTATGG TGTTACCTGG
AGATGTTTTT GATTTGCCTA TTCGGAAGGA CATTATTCAT CGTGTCGTTA GGTGGCAGCT TGCAAAACGA CAACAGGGGA
CTCATTCAAC AAAAACTATA AGTGAGGTCA GTGGGACTGG AAGAAAGCCT TGGAATCAAA AGGGAACTGG TAGAGCAAGG
CATGGTTCAT TGCGTGGGCC TCAGTTCAGG GGTGGTGCCA CTATGCATGG CCCCAAGCCT CGAAGCCATG CTTTCAAAGT
CAATAAGAAG GTTCGGCGTC TAGGGCTAAA GATTGCCTTG TCCGCTCGTG CAGCAGAAGG AAAGCTTCTT GTGTTTGAGG
ATCTGGAGGT TCTCACACAT AAAACCAAAA ACATTGTGAA GTATTACAAT CAAATGGAGA GCACCAAGAA ACTTCTGCTT
GTGGATGGCG GGCCTATAGA TGAAAAGTTA AAATTATCTA CACAAAATCT ACACTATGTT AACATACTTC CCTCCATTGG
CTTGAATGTC TACAGCATTT TGCTGCATGA CACATTGGTG ATGTCCCAAG CTGCGGTGAA CAAAATTGTT GAGCGGATGC
GTACTCCAAT TAATCGTTGA GGCTAAAACT ATTTTTTTGT GCTTTACTTC TTTTACTCAA AAATAGGAAT TGTATCCCAT
GTCCCCATTT CTGTAACATA AAGAGATCCA ATGAGTGGTA CGAGATTTCT GTTAAAAATT ACATAAGTGA GGCAACTTAT
GCCATTTTGC TCGTGTTGAA GGTGAACTTA GGAAATTGTT GGTCTAATAT GAATGTTCAA GGGGTTAGGT TTATCATGTT
TTCCCATGAC TAAACTCGTA TCTTTTTCAA TCTTTTCACA TGCATAAGAT TTGATAAACC GGCATAAGTC ATCCCTGTCC
TTCGATCATG AATTTA

>Vigan.05G087400.01
ATGGCGGCGT TAATTTCCAA AAGGCTACTA CGTTGTTCTT CTGGGTCCTT GCCTTCACTG GGACGATGCT ACTTTAATTC
ACCTAATGCT GCGTCTGCCC CTTTTTATCA ATCACGTTAT GTATACAGCA GATTATCTGG GGAAAGACTC CTTTCTGCAG
AATCTTGTTT GGTCAGATCA ATGATCCAAC AATTTTCTAC TTCTATTTTA ACTCCTGTGC CTGATGAGAG CGCATTTCCG
TCCGATTTAT TGTCCAAGAA GGCTCTAGCA ACATCTGAGC GTACTATAGG GCTTTGCCAG GATCTTTTAA TTCCAGTTAC
CAACTTTCAT AATGAAGACA AGGGCTTTAT GGTGTTACCT GGAGATGTTT TTGATTTGCC TATTCGGAAG GACATTATTC
ATCGTGTCGT TAGGTGGCAG CTTGCAAAAC GACAACAGGG GACTCATTCA ACAAAAACTA TAAGTGAGGT CAGTGGGACT
GGAAGAAAGC CTTGGAATCA AAAGGGAACT GGTAGAGCAA GGCATGGTTC ATTGCGTGGG CCTCAGTTCA GGGGTGGTGC
CACTATGCAT GGCCCCAAGC CTCGAAGCCA TGCTTTCAAA GTCAATAAGA AGGTTCGGCG TCTAGGGCTA AAGATTGCCT
TGTCCGCTCG TGCAGCAGAA GGAAAGCTTC TTGTGTTTGA GGATCTGGAG GTTCTCACAC ATAAAACCAA AAACATTGTG
AAGTATTACA ATCAAATGGA GAGCACCAAG AAACTTCTGC TTGTGGATGG CGGGCCTATA GATGAAAAGT TAAAATTATC
TACACAAAAT CTACACTATG TTAACATACT TCCCTCCATT GGCTTGAATG TCTACAGCAT TTTGCTGCAT GACACATTGG
TGATGTCCCA AGCTGCGGTG AACAAAATTG TTGAGCGGAT GCGTACTCCA ATTAATCGTT GA

>Vigan.05G087400.01
MAALISKRLL RCSSGSLPSL GRCYFNSPNA ASAPFYQSRY VYSRLSGERL LSAESCLVRS MIQQFSTSIL TPVPDESAFP
SDLLSKKALA TSERTIGLCQ DLLIPVTNFH NEDKGFMVLP GDVFDLPIRK DIIHRVVRWQ LAKRQQGTHS TKTISEVSGT
GRKPWNQKGT GRARHGSLRG PQFRGGATMH GPKPRSHAFK VNKKVRRLGL KIALSARAAE GKLLVFEDLE VLTHKTKNIV
KYYNQMESTK KLLLVDGGPI DEKLKLSTQN LHYVNILPSI GLNVYSILLH DTLVMSQAAV NKIVERMRTP INR*