GBrowse Details

Vigan.05G089100.01

Basic Information:
Name: Vigan.05G089100.01
Multiple alignment
Variant Information
Position: Chr05:6806132..6808318 (+ strand)
Length: 2187
Functional Information:
Description: Similar to ACC oxidase. [Q2KTE6, Vigna radiata]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.06,67.99,502.31,56.60,192.75,1.65,134.15,34.53
Automatic updates:
Name: NM_001254970 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 1-aminocyclopropane-1-carboxylate oxidase-like (LOC100807427), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317289 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata 1-aminocyclopropane-1-carboxylate oxidase (LOC106776177), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6806132..6806266 (+ strand)
Length: 135
Type: five_prime_UTR
Position: Chr05:6806267..6806371 (+ strand)
Length: 105
Type: CDS
Position: Chr05:6806478..6806704 (+ strand)
Length: 227
Type: CDS
Position: Chr05:6807227..6807560 (+ strand)
Length: 334
Type: CDS
Position: Chr05:6807766..6808053 (+ strand)
Length: 288
Type: CDS
Position: Chr05:6808054..6808318 (+ strand)
Length: 265
Type: three_prime_UTR


>Vigan.05G089100.01
ATTTTTTCCT TTCTTAGCCT CTCCCAGAAG TTGAGTTCTA TAAATACAAC AGATTGCACC TCTGAAAGCA TCACTACTCA
CAGCATATCC TCACAATCAC ATAGTTGTTT AAAGCGATAG AAAAGAAAGA AAGAAATGGC AAACTTTCCA GTTGTTGACA
TGGGAAAGCT TAACACTGAA GAGAGAGGAG CTGCCATGGA AATGATAAAA GATGCTTGTG AGAACTGGGG TTTCTTTGAG
TTGGTGAACC ATGGTATATC CATTGAGTTG ATGGACACCG TGGAGAAGTT AACAAAAGAG CACTACAAGA AGACTATGGA
GCAAAGGTTC AAAGAAATGG TGGCCAACAA AGGTCTTGAG TCAGTTCAGT CAGAAATCAG TGACTTGGAC TGGGAAAGTA
CCTTTTTTCT GCGCCATCTT CCAGTCTCCA ATGTTTCAGA GAACACAGAT CTTGATGAAG ACTACAGGAA AATAATGAAG
CAGTTTGCAG TAGAACTGGA GAAACTCGCA GAGCATCTTC TTGACTTGCT GTGTGAGAAT CTTGGACTGG AGAAAGGGTA
CCTGAAGAAG GTGTTCTATG GATCGAAGGG CCCAAATTTT GGCACGAAAG TTAGCAACTA CCCTCCTTGT CCGACCCCTG
ATCTGATAAA GGGCCTAAGA GCTCACACTG ACGCCGGTGG CATTATCCTA CTGTTCCAAG ATGACAAGGT CAGTGGACTG
CAGCTCCTCA AGGATGACCA GTGGATCGAT GTCCCACCAA TGCGTCACTC CATTGTCATC AACCTCGGTG ACCAACTTGA
GGTCATAACC AATGGCAAGT ACAAGAGTGT CATGCACCGA GTCATTGCTC AGACGGATGG CACCAGAATG TCCCTGGCTT
CCTTCTATAA TCCCGGTGAT GATGCTGTGA TTTCTCCAGC ACCAGCCTTG GTGAAGGAAT CGGATGAAAC AAGCCAAGTA
TACCCGAAAT TTGTGTTTAA TGATTACATG AAGCTCTATG CTGGTCTCAA GTTTCAGGCT AAAGAACCAA GGTTTGAAGC
TATGAAGGCC GTGTCAAGCG TTGATGTGGG GCCCATAGCC ACAGTTTGAG CCTCATAAAT ATATATATAT ATATATATAT
ATATATATAT AAGTATGGGA ACGTATGTGT GTTTATGTTA ATAATAAACA AAGGCTACTC AGCTCAGCGT ATAGTGTTTG
ATGCCCTTGA TAATTGGTAT GGAAGCTTGT GCAGTATAAT CAAACCTTAT ATATAATATT TATTAGTTCA AAAATAAAGT
ATTAGGTTGA TCTTAGTTGG GGTGTGTGTG ATCAGAGATG TCGTCTGTGA TATGATGGTC AAGTTAATGC GATG

>Vigan.05G089100.01
ATGGCAAACT TTCCAGTTGT TGACATGGGA AAGCTTAACA CTGAAGAGAG AGGAGCTGCC ATGGAAATGA TAAAAGATGC
TTGTGAGAAC TGGGGTTTCT TTGAGTTGGT GAACCATGGT ATATCCATTG AGTTGATGGA CACCGTGGAG AAGTTAACAA
AAGAGCACTA CAAGAAGACT ATGGAGCAAA GGTTCAAAGA AATGGTGGCC AACAAAGGTC TTGAGTCAGT TCAGTCAGAA
ATCAGTGACT TGGACTGGGA AAGTACCTTT TTTCTGCGCC ATCTTCCAGT CTCCAATGTT TCAGAGAACA CAGATCTTGA
TGAAGACTAC AGGAAAATAA TGAAGCAGTT TGCAGTAGAA CTGGAGAAAC TCGCAGAGCA TCTTCTTGAC TTGCTGTGTG
AGAATCTTGG ACTGGAGAAA GGGTACCTGA AGAAGGTGTT CTATGGATCG AAGGGCCCAA ATTTTGGCAC GAAAGTTAGC
AACTACCCTC CTTGTCCGAC CCCTGATCTG ATAAAGGGCC TAAGAGCTCA CACTGACGCC GGTGGCATTA TCCTACTGTT
CCAAGATGAC AAGGTCAGTG GACTGCAGCT CCTCAAGGAT GACCAGTGGA TCGATGTCCC ACCAATGCGT CACTCCATTG
TCATCAACCT CGGTGACCAA CTTGAGGTCA TAACCAATGG CAAGTACAAG AGTGTCATGC ACCGAGTCAT TGCTCAGACG
GATGGCACCA GAATGTCCCT GGCTTCCTTC TATAATCCCG GTGATGATGC TGTGATTTCT CCAGCACCAG CCTTGGTGAA
GGAATCGGAT GAAACAAGCC AAGTATACCC GAAATTTGTG TTTAATGATT ACATGAAGCT CTATGCTGGT CTCAAGTTTC
AGGCTAAAGA ACCAAGGTTT GAAGCTATGA AGGCCGTGTC AAGCGTTGAT GTGGGGCCCA TAGCCACAGT TTGA

>Vigan.05G089100.01
MANFPVVDMG KLNTEERGAA MEMIKDACEN WGFFELVNHG ISIELMDTVE KLTKEHYKKT MEQRFKEMVA NKGLESVQSE
ISDLDWESTF FLRHLPVSNV SENTDLDEDY RKIMKQFAVE LEKLAEHLLD LLCENLGLEK GYLKKVFYGS KGPNFGTKVS
NYPPCPTPDL IKGLRAHTDA GGIILLFQDD KVSGLQLLKD DQWIDVPPMR HSIVINLGDQ LEVITNGKYK SVMHRVIAQT
DGTRMSLASF YNPGDDAVIS PAPALVKESD ETSQVYPKFV FNDYMKLYAG LKFQAKEPRF EAMKAVSSVD VGPIATV*