GBrowse Details

Vigan.05G089400.01

Basic Information:
Name: Vigan.05G089400.01
Multiple alignment
Variant Information
Position: Chr05:6819456..6824578 (- strand)
Length: 5123
Functional Information:
Description: Similar to Ubiquinol oxidase. [V7BRN3, Phaseolus vulgaris]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: alternative oxidase activity (GO:0009916)
InterPro: Alternative oxidase (IPR002680)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:81.61,30.60,40.48,46.46,54.32,4.10,9.27,8.72
Arabidopsis thaliana homolog: AT4G22260.1
Automatic updates:
Name: NM_001255210 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max alternative oxidase 4, chloroplastic/chromoplastic-like (LOC100813378), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6819456..6819874 (- strand)
Length: 419
Type: three_prime_UTR
Position: Chr05:6819875..6820089 (- strand)
Length: 215
Type: CDS
Position: Chr05:6820465..6820512 (- strand)
Length: 48
Type: CDS
Position: Chr05:6820604..6820675 (- strand)
Length: 72
Type: CDS
Position: Chr05:6821071..6821139 (- strand)
Length: 69
Type: CDS
Position: Chr05:6821915..6822023 (- strand)
Length: 109
Type: CDS
Position: Chr05:6823007..6823122 (- strand)
Length: 116
Type: CDS
Position: Chr05:6823388..6823481 (- strand)
Length: 94
Type: CDS
Position: Chr05:6823876..6824053 (- strand)
Length: 178
Type: CDS
Position: Chr05:6824124..6824218 (- strand)
Length: 95
Type: CDS
Position: Chr05:6824219..6824578 (- strand)
Length: 360
Type: five_prime_UTR


>Vigan.05G089400.01
AAGAAGAAAA GGCTAGAAGA GTTATTATTA CCTCACATAT AACTAGTTTT TAATTTTTGT GACATATATT CTATGAACCC
AAAGGTCGAT TAAACTAAAA TTTTCCGTGA AAGGACAACG AAATACCGAA TTTTGTATAG TTGAAAGAAA AAAACAAAAT
AAGGAAAACT GAGCAGAAAG AATATCCAAT ACAGGGGCAC GGGAAGTCGC CGGAATTGCC GTAAATGCGG CATTTGATAA
ATCTAATGCC TCCGTGGACC TCTCACCCTG TCGTTCTCCT TTCTTCTATT CAAGGCCGTT AATTTCTCTC TCTCCCTCTC
TCTCTCTCTC CACACACACA CCTCTCTATC CCTCTCAACC ATGGCGGCGA TTCTCTCTTC TTCACTCTTT GCTTCCTCCT
GTCTCCCCAA ACCATTTTCT CATCCTCGAA CTCATACCGC TTCATCACTT CTCAAGGCTC GCGCTTCTCT CCTTCAGGAT
AACGAGGAAA AAGTGATCGT GCAGGACTCC TTCCCCTCCA AATCATCTCC ACTTCACACC ACTAATGGAA AATCTTCGGT
GGACTCAATT AGCACCTCTG CGTTTGAGAA AGGGATTATC AAGGTCGAAC AATCGGTCAA TATCTTTCTC ACGGATTCTG
TCATAAAGAT ACTTGATACT CTGTACCATG ATAGAAACTA CGCCAGGTTT TATGTGCTGG AGACTATTGC CAGGGTTCCT
TACTTTGCCT TTATGTCAGT TCTCCATATG TACGAGAGTT TTGGATGGTG GAGGCGGGCA GATTATCTGA AAGTACATTT
TGCTGAGAGC TGGAATGAAA TGCATCATTT GCTCATCATG GAAGAACTAG GAGGGAATGC TTGGTGGTTT GATCGGTTCC
TTGCTCAGCA TATAGCAATA TTTTACTATA TTATGACAGT TTTAATGTAT GCAATAAGCC CAAGAATGGC ATATCACTTT
TCTGAATGTG TAGAGAGTCA TGCATTTGAA ACTTACGACA AATTTATCAA GGTCCAAGGA GAGGAATTGA AAAAAATGCC
GCCTCCTGAG GTTGCTGTGA AATATTATAC AGGAGATGAC TTGTATTTAT TTGATGAATT TCAGACTTCC AGAGTTCCAA
ATTCTAGAAG ACCTAAGATA GACAATCTGT ACGACGTATT TTTAAATATC AGAGATGACG AAGCTGAACA TTGTAAGACA
ATGAAGGCTT GTCAAATCCA TGGTAACCTC CGGTCACCTC ATTCATATGC AGAGGATGGT GATGATGTTT CAGCCTGTGC
TCTGGAAGTA GATTGTGAAG GAATAGTAGA CTGTATAAAG AAATCAGTTA ATCCTGATCC AGCCAGAGTG AAGTAATAAG
ACGTGGCACA ATACATAATA AGATAGGAGG CAGGAAATAG TTGAAATTTG GATGTGGCAA GTAATTGCCT TATAGCAAGT
AAATGTGCAA TTATTTAACC TTAAATATTA ATAAATCAAC ATAATGAAAT ATCTTATGTA GACAGTCTTC TGTAGGTTAG
ATGTTCATAC TTCACTCATT GAAGGTATAA GAGAAAATAA TATTATGAAG ATCGTCTATA GTTCTGCACT TGCCTTTTCC
TTATTTTTTG AATTTGGAGA TTTGCCATTA GAGGTATAGG GTTCCATGCA TTGCCTTGTA GAACCATATC TATCTGGACC
TGTAAATTTG GTTCCCTCTT ATGTTTTGGT CCTCACCTAG GGTAAAAAAG GGTAAAAAAA TACCCACAGT GCAAAGAAGC
TTCCTATTGA AAAAA

>Vigan.05G089400.01
ATGGCGGCGA TTCTCTCTTC TTCACTCTTT GCTTCCTCCT GTCTCCCCAA ACCATTTTCT CATCCTCGAA CTCATACCGC
TTCATCACTT CTCAAGGCTC GCGCTTCTCT CCTTCAGGAT AACGAGGAAA AAGTGATCGT GCAGGACTCC TTCCCCTCCA
AATCATCTCC ACTTCACACC ACTAATGGAA AATCTTCGGT GGACTCAATT AGCACCTCTG CGTTTGAGAA AGGGATTATC
AAGGTCGAAC AATCGGTCAA TATCTTTCTC ACGGATTCTG TCATAAAGAT ACTTGATACT CTGTACCATG ATAGAAACTA
CGCCAGGTTT TATGTGCTGG AGACTATTGC CAGGGTTCCT TACTTTGCCT TTATGTCAGT TCTCCATATG TACGAGAGTT
TTGGATGGTG GAGGCGGGCA GATTATCTGA AAGTACATTT TGCTGAGAGC TGGAATGAAA TGCATCATTT GCTCATCATG
GAAGAACTAG GAGGGAATGC TTGGTGGTTT GATCGGTTCC TTGCTCAGCA TATAGCAATA TTTTACTATA TTATGACAGT
TTTAATGTAT GCAATAAGCC CAAGAATGGC ATATCACTTT TCTGAATGTG TAGAGAGTCA TGCATTTGAA ACTTACGACA
AATTTATCAA GGTCCAAGGA GAGGAATTGA AAAAAATGCC GCCTCCTGAG GTTGCTGTGA AATATTATAC AGGAGATGAC
TTGTATTTAT TTGATGAATT TCAGACTTCC AGAGTTCCAA ATTCTAGAAG ACCTAAGATA GACAATCTGT ACGACGTATT
TTTAAATATC AGAGATGACG AAGCTGAACA TTGTAAGACA ATGAAGGCTT GTCAAATCCA TGGTAACCTC CGGTCACCTC
ATTCATATGC AGAGGATGGT GATGATGTTT CAGCCTGTGC TCTGGAAGTA GATTGTGAAG GAATAGTAGA CTGTATAAAG
AAATCAGTTA ATCCTGATCC AGCCAGAGTG AAGTAA

>Vigan.05G089400.01
MAAILSSSLF ASSCLPKPFS HPRTHTASSL LKARASLLQD NEEKVIVQDS FPSKSSPLHT TNGKSSVDSI STSAFEKGII
KVEQSVNIFL TDSVIKILDT LYHDRNYARF YVLETIARVP YFAFMSVLHM YESFGWWRRA DYLKVHFAES WNEMHHLLIM
EELGGNAWWF DRFLAQHIAI FYYIMTVLMY AISPRMAYHF SECVESHAFE TYDKFIKVQG EELKKMPPPE VAVKYYTGDD
LYLFDEFQTS RVPNSRRPKI DNLYDVFLNI RDDEAEHCKT MKACQIHGNL RSPHSYAEDG DDVSACALEV DCEGIVDCIK
KSVNPDPARV K*