GBrowse Details

Vigan.05G089500.01

Basic Information:
Name: Vigan.05G089500.01
Multiple alignment
Variant Information
Position: Chr05:6832378..6835662 (+ strand)
Length: 3285
Functional Information:
Description: Similar to AT3g20300/MQC12_5. [Q2HTI8, Medicago truncatula]
InterPro: Protein of unknown function DUF3537 (IPR021924)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.02,0.00,13.40,6.95,9.50,3.85,13.20,11.03
Automatic updates:
Name: NM_001253107 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100809035 (LOC100809035), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6832378..6832764 (+ strand)
Length: 387
Type: five_prime_UTR
Position: Chr05:6832765..6833163 (+ strand)
Length: 399
Type: CDS
Position: Chr05:6833762..6834211 (+ strand)
Length: 450
Type: CDS
Position: Chr05:6834599..6834908 (+ strand)
Length: 310
Type: CDS
Position: Chr05:6834998..6835131 (+ strand)
Length: 134
Type: CDS
Position: Chr05:6835132..6835662 (+ strand)
Length: 531
Type: three_prime_UTR


>Vigan.05G089500.01
CAGGAACGAC ACCAATTTGT GAATTATTTT CTCTCTCGCA GTTTTACTAA AATACGATGA CAGCTATAAT GGGATTGGTA
ACGCTGACAT CAATATCACA GCGATCATTC AGCTATTAAG TTCCTCTGAA AGAGTCCATC CTAAACCTTT AACTAATATG
AAATATTCAA AAGAGGGACA CAAGACATTG CATTATTGTT GCAGTTTAAA CTTTAGAAGA CAAGTAAAGA GTTTAGAGAA
AGCGACACCA TTTACATCCA AATTAAGATC CCTTACAGTA CTTCAGATTA CAATTGTCAA CACAATCACA TTCACACCCT
TTTGGATTTC TAGTTCCATG TCCTTTTATC TGATTCTAGT GCATGCCTAG ATTTCAATTT CGAGGCCATG GAAGAGGAAA
GAGGGAGTTT CCTGCCGAAC AACAAAGATG AGCTACTACC ACTTGATAGA ACAACAGAAT TGAAGAACTT CAGATCATAC
CTGAGATGGG TTTACGTGGA TCATTCCAAC GTGTGCAAAG CTGGTTTCTC TTGGTCCGTG TTCTTCACCT TGGCCTTTGT
TGTGCCCATA CTTTCACACT TTTTGCTTGA TTGCCCCACC TGCGATCAAG ATCATACTCG ACCGTACCAC ATACCAGTGC
AGATTTCTCT CTCCATCTTT GCAGCCCTCT CTTTCATCAG TATTTCTTCC TGGGATCGTA AATATGGCTT CAGCAAGTTT
CTCTTCCTTG ATAAATTAGG TGATGAAAGC CTCAAGATTC AACGAGGGTA CTCGGAACAG ATGCAGGGAA CCATGAAGCT
CATCTTGAGG TGGGGGCTTC CCTGTTTCAT AGCAGAATTT GCCTACAAGA TATGGTGGTA CGTCTCAGGA GTTTCACAAA
TACCACATTA CGGTAATATA TACGTGAGCA GCATCATTCT GTGCACATTT GAGCTATGTT CCTGGCTTTA TAGAACCTCC
ATTTTCTTCC TGGTGTGTGT CCTCTTTCGA CTTATCTGCT ACTTGCAAAT ACTCAGACTA GATGAGTTTG CTCGAGTTTT
TCATCGAGAA ACTGAGGTGG GGTCAATCTT GCTGGAGCAC CTTAGATTGA GAAGGAATCT TCGGATCATA AGCCATCGTT
TCCGAGTTTT CATTCTATCT TCTCTGCTTT TGGTGACAGC AAGCCAACTC ATTTTTCTGC TTATGGTTAC AAAAGCCCAT
GCAGATGTTG ATATCATGAA GTCTGGAGAA CTTGCGTTAG TGTCGATCAC CCTGGTGAGT GGACTTTTCT TACTCTTGCG
AGGTGCAACC AAGATCACAC ATAAAGCACA CTCCGTTACA GGCCTTGCAG CTAAGTGGCA TATATGTGCT ACCATAAATT
CATTTGACAA CATTGATGGA GAGACACCAA CAACTGCGCA AGCAATTTCA GCCCAAGCTA TTGCTGCCAA TATTAGTTGG
GGATCATCGG ATGATGAGGT GGGAGATGAG GAGGACGAGT TGGATAACAC AAAATTGCTG CCAATTTACA CCCAAACAAT
CTCATTTCAC AAGAGGCAGG CTCTAGTGAC ATACTTGGAG AACAATAGAG CAGGAATCAC AGTGTTTGGG TTCATGCTTG
ACAGATCCTG GCTCCACTCC ATTTTTGGCA TTCAAATGGC TCTTTGCCTT TGGCTACTTA ACAAAACAAT TGGTGTTTAG
GGACAGATTG TAACTGTTGT TATGTGATTC CTCTTATCTT GTTTGTTGTA TATTTTTTTT TTATTTTCAA CCGTTCATTT
GGATCTATCT GGTTGTGATC TGTGAAATGT GAACGATACA CGTTTGCACC AGATTTTGCT GAGACTATTT TGAATGTGAC
TGCATGTTCT ACTACAGTAC AAGGGAGCGA ATTCTAGTAT CGGATGACAC AGGTACAGGT ACAGCACATC GAATTGCAGA
GGCAGAAACA AGCTTTTGGT TGTAATACAT GACTGAAACA TATATGTAAG TGCTCATTCG GCTTATCGAT CAAAGCAAAA
TAGTTATTAA TAGTGTGATA AAACATATTC ACGTACGTAG ATTTTGTATA ATTTTTTTTT ATTCATTAAT AACTAAAATT
ATTTGATATC CTAGAATTAG AAAAGTGAAA ATGTATCAGC TCCTTTCTAC TTCTGAGCAA AAGCCTATAT TCAATCGCAA
AGAGTGGACT GTGATGCTAC GTGTGTCAAT CTGGATCCTT AACCTTTTAA G

>Vigan.05G089500.01
ATGGAAGAGG AAAGAGGGAG TTTCCTGCCG AACAACAAAG ATGAGCTACT ACCACTTGAT AGAACAACAG AATTGAAGAA
CTTCAGATCA TACCTGAGAT GGGTTTACGT GGATCATTCC AACGTGTGCA AAGCTGGTTT CTCTTGGTCC GTGTTCTTCA
CCTTGGCCTT TGTTGTGCCC ATACTTTCAC ACTTTTTGCT TGATTGCCCC ACCTGCGATC AAGATCATAC TCGACCGTAC
CACATACCAG TGCAGATTTC TCTCTCCATC TTTGCAGCCC TCTCTTTCAT CAGTATTTCT TCCTGGGATC GTAAATATGG
CTTCAGCAAG TTTCTCTTCC TTGATAAATT AGGTGATGAA AGCCTCAAGA TTCAACGAGG GTACTCGGAA CAGATGCAGG
GAACCATGAA GCTCATCTTG AGGTGGGGGC TTCCCTGTTT CATAGCAGAA TTTGCCTACA AGATATGGTG GTACGTCTCA
GGAGTTTCAC AAATACCACA TTACGGTAAT ATATACGTGA GCAGCATCAT TCTGTGCACA TTTGAGCTAT GTTCCTGGCT
TTATAGAACC TCCATTTTCT TCCTGGTGTG TGTCCTCTTT CGACTTATCT GCTACTTGCA AATACTCAGA CTAGATGAGT
TTGCTCGAGT TTTTCATCGA GAAACTGAGG TGGGGTCAAT CTTGCTGGAG CACCTTAGAT TGAGAAGGAA TCTTCGGATC
ATAAGCCATC GTTTCCGAGT TTTCATTCTA TCTTCTCTGC TTTTGGTGAC AGCAAGCCAA CTCATTTTTC TGCTTATGGT
TACAAAAGCC CATGCAGATG TTGATATCAT GAAGTCTGGA GAACTTGCGT TAGTGTCGAT CACCCTGGTG AGTGGACTTT
TCTTACTCTT GCGAGGTGCA ACCAAGATCA CACATAAAGC ACACTCCGTT ACAGGCCTTG CAGCTAAGTG GCATATATGT
GCTACCATAA ATTCATTTGA CAACATTGAT GGAGAGACAC CAACAACTGC GCAAGCAATT TCAGCCCAAG CTATTGCTGC
CAATATTAGT TGGGGATCAT CGGATGATGA GGTGGGAGAT GAGGAGGACG AGTTGGATAA CACAAAATTG CTGCCAATTT
ACACCCAAAC AATCTCATTT CACAAGAGGC AGGCTCTAGT GACATACTTG GAGAACAATA GAGCAGGAAT CACAGTGTTT
GGGTTCATGC TTGACAGATC CTGGCTCCAC TCCATTTTTG GCATTCAAAT GGCTCTTTGC CTTTGGCTAC TTAACAAAAC
AATTGGTGTT TAG

>Vigan.05G089500.01
MEEERGSFLP NNKDELLPLD RTTELKNFRS YLRWVYVDHS NVCKAGFSWS VFFTLAFVVP ILSHFLLDCP TCDQDHTRPY
HIPVQISLSI FAALSFISIS SWDRKYGFSK FLFLDKLGDE SLKIQRGYSE QMQGTMKLIL RWGLPCFIAE FAYKIWWYVS
GVSQIPHYGN IYVSSIILCT FELCSWLYRT SIFFLVCVLF RLICYLQILR LDEFARVFHR ETEVGSILLE HLRLRRNLRI
ISHRFRVFIL SSLLLVTASQ LIFLLMVTKA HADVDIMKSG ELALVSITLV SGLFLLLRGA TKITHKAHSV TGLAAKWHIC
ATINSFDNID GETPTTAQAI SAQAIAANIS WGSSDDEVGD EEDELDNTKL LPIYTQTISF HKRQALVTYL ENNRAGITVF
GFMLDRSWLH SIFGIQMALC LWLLNKTIGV *