GBrowse Details

Vigan.05G092000.01

Basic Information:
Name: Vigan.05G092000.01
Multiple alignment
Variant Information
Position: Chr05:7046228..7051005 (+ strand)
Length: 4778
Functional Information:
Description: Similar to MO25-like protein At5g47540-like isoform X2. [XP_006597602.1, Glycine max]
GO: Molecular Function: binding (GO:0005488)
InterPro: Armadillo-like helical (IPR011989)
Mo25-like (IPR013878)
Armadillo-type fold (IPR016024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:29.42,16.65,25.40,28.93,13.76,19.21,23.02,26.45
Arabidopsis thaliana homolog: AT4G17270.1, AT5G47540.1
Automatic updates:
Name: NM_001363815 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative MO25-like protein (LOC100797189), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:7046228..7046574 (+ strand)
Length: 347
Type: five_prime_UTR
Position: Chr05:7046575..7046694 (+ strand)
Length: 120
Type: CDS
Position: Chr05:7047264..7047428 (+ strand)
Length: 165
Type: CDS
Position: Chr05:7047597..7047715 (+ strand)
Length: 119
Type: CDS
Position: Chr05:7048066..7048140 (+ strand)
Length: 75
Type: CDS
Position: Chr05:7048404..7048497 (+ strand)
Length: 94
Type: CDS
Position: Chr05:7048595..7048654 (+ strand)
Length: 60
Type: CDS
Position: Chr05:7049363..7049431 (+ strand)
Length: 69
Type: CDS
Position: Chr05:7049829..7049927 (+ strand)
Length: 99
Type: CDS
Position: Chr05:7050231..7050275 (+ strand)
Length: 45
Type: CDS
Position: Chr05:7050360..7050462 (+ strand)
Length: 103
Type: CDS
Position: Chr05:7050536..7050594 (+ strand)
Length: 59
Type: CDS
Position: Chr05:7050595..7051005 (+ strand)
Length: 411
Type: three_prime_UTR


>Vigan.05G092000.01
GTGAGTGTAT TTTGTGTTTG GCTGAAACTG GAGCCAGTAA ATAAAATTTT GATGAATTAC GAAAGCAGGA GGAGGGTTGT
TTTTTCTGGT ATTAGTGTGT GAGGTCCAAT CCCAATCCTC TACCTCATCC TTTTCTTCCA TCCATGTTCA GTTCCTCTAT
AATTCCCCAA CAAAATCTCA GAAGTAAATA AATAAATAAA TAATCATTAT ATTTGGAAAT AATTAAAATA TCCAGATTCA
TCTTGTTCTT ATTTTGCCCA TCCCTTCCAC TCCCTGAGAA TCCCAAACCC TAACTAGACT GTGTGATCAG AGAGAAAAGG
AAAGATTACA CACAGCACTT TGAGAAGATG AAGGGTCTCT TCAAGTCTAA ACCTCGCACT CCTGCAGATG TAGTGCGTCA
CACCAGAGAT CTTCTACTCT TCGTTGATCG GAACTTCGAA TCCCGCGAAA GTAAAAGAGA AGAGAAGCAA ATGTCCGAGC
TATTTAAAAA CGTCAGGGAG CTTAAGCAAA TCCTGTATGG AAATAGTGAT TCTGAACCAG TTGCGGAAGC TTGCGCACAG
TTGACTCAGG AGTTCTTTAA GGAGGACACA TTGCGTCTGT TTATCAAATG TCTTCCAAAA TTGAATCTGG AGGCCAGAAA
AGATGCCACT CAAGTTGTTG CAAATTTACA AAGGCAACAG GTTCAGTTTA AGTTGATTGC ATCTGATTAC CTGGAAAAAA
ATCTGGATCT TATGGATGTC TTGATAGTTG GCTATGAAAA CACAGATATG GCTTTACACT ATGGTGCAAT GCTAAGGGAG
TGTATTCGAC ATCAAATTGT CGCAAAATAT GTTCTCAACT CACCACTTAT GAAGAGATTC TTTGACTATA TCCAACTCCC
AAATTTTGAC ATTGCTGCGG ATGCTGCAGC TACCTTTAAG GAGCTCTTGA CAAGACATAA ATCTACTGTA GCCGAATTCC
TTTCCAAGAA TTATGAATGG TTTTTTGCAG AATATAACAC TAAGCTGTTG GAATCTTCCA ATTACATTAC AAGGCGCCAA
GCTGTCAAGT TGTTGGGAGA TATATTACTT GACCGTTCAA ATTCAGCAGT AATGACACGA TACGTGAGCT CAAGAGACAA
CTTGAGGATT TTAATGAATC TTCTAAGAGA GTCAAGCAAG AGCATACAAA TTGAAGCATT TCATGTTTTC AAGTTATTTG
CTGCTAACCA ACATAAACCA GCTGATATCG TTAGTATATT TGTCGCAAAC AAAAGTAAGA TGCTGAGACT ATTGGAAGAC
TTCAAAATTG ATAAAGAGGA TGAACAATTT GAAGCTGACA AAGCTCAAGT GATGAAGGAA ATCGAAGCTC TTTAACCCAG
GGAACAATGC ACCTGAAGTG CATATTGTGT TAAGTAGCAC GTTACCATGT GGCATTTCAC TTTAGCGAAT TGTGTATTGT
AATAGTTATT AGTTTTTATC ATGATGGGAC TATCATTTCA TACAGACTTT GATGCTTTCT TGCTGTAATT TTATTACGCC
CTTTAAAAAC TGTAGATAAA TAAATTGCTT AATGAGCTAC GTGCGGTTTA TTATGTCTTT GTAGGTCTAT AAGTAATAAA
GGTATTCGAG GTCATGGAAT CTCAAAATAT TTGTTTCGCT AAATTTTGTG TAGTGTTTAG AAAAAGAAAA TAAAAAGTTA
AGATTAGTTT CCGTAACTTC ATAGGGTTCT CATTTAATTT GTTCAAGAAT TGAGTTGATT TTAGTTCATG GGAGAAGTTT
AATTTA

>Vigan.05G092000.01
ATGAAGGGTC TCTTCAAGTC TAAACCTCGC ACTCCTGCAG ATGTAGTGCG TCACACCAGA GATCTTCTAC TCTTCGTTGA
TCGGAACTTC GAATCCCGCG AAAGTAAAAG AGAAGAGAAG CAAATGTCCG AGCTATTTAA AAACGTCAGG GAGCTTAAGC
AAATCCTGTA TGGAAATAGT GATTCTGAAC CAGTTGCGGA AGCTTGCGCA CAGTTGACTC AGGAGTTCTT TAAGGAGGAC
ACATTGCGTC TGTTTATCAA ATGTCTTCCA AAATTGAATC TGGAGGCCAG AAAAGATGCC ACTCAAGTTG TTGCAAATTT
ACAAAGGCAA CAGGTTCAGT TTAAGTTGAT TGCATCTGAT TACCTGGAAA AAAATCTGGA TCTTATGGAT GTCTTGATAG
TTGGCTATGA AAACACAGAT ATGGCTTTAC ACTATGGTGC AATGCTAAGG GAGTGTATTC GACATCAAAT TGTCGCAAAA
TATGTTCTCA ACTCACCACT TATGAAGAGA TTCTTTGACT ATATCCAACT CCCAAATTTT GACATTGCTG CGGATGCTGC
AGCTACCTTT AAGGAGCTCT TGACAAGACA TAAATCTACT GTAGCCGAAT TCCTTTCCAA GAATTATGAA TGGTTTTTTG
CAGAATATAA CACTAAGCTG TTGGAATCTT CCAATTACAT TACAAGGCGC CAAGCTGTCA AGTTGTTGGG AGATATATTA
CTTGACCGTT CAAATTCAGC AGTAATGACA CGATACGTGA GCTCAAGAGA CAACTTGAGG ATTTTAATGA ATCTTCTAAG
AGAGTCAAGC AAGAGCATAC AAATTGAAGC ATTTCATGTT TTCAAGTTAT TTGCTGCTAA CCAACATAAA CCAGCTGATA
TCGTTAGTAT ATTTGTCGCA AACAAAAGTA AGATGCTGAG ACTATTGGAA GACTTCAAAA TTGATAAAGA GGATGAACAA
TTTGAAGCTG ACAAAGCTCA AGTGATGAAG GAAATCGAAG CTCTTTAA

>Vigan.05G092000.01
MKGLFKSKPR TPADVVRHTR DLLLFVDRNF ESRESKREEK QMSELFKNVR ELKQILYGNS DSEPVAEACA QLTQEFFKED
TLRLFIKCLP KLNLEARKDA TQVVANLQRQ QVQFKLIASD YLEKNLDLMD VLIVGYENTD MALHYGAMLR ECIRHQIVAK
YVLNSPLMKR FFDYIQLPNF DIAADAAATF KELLTRHKST VAEFLSKNYE WFFAEYNTKL LESSNYITRR QAVKLLGDIL
LDRSNSAVMT RYVSSRDNLR ILMNLLRESS KSIQIEAFHV FKLFAANQHK PADIVSIFVA NKSKMLRLLE DFKIDKEDEQ
FEADKAQVMK EIEAL*