VIGGS:GBrowse

Vigan.05G096800.01

Basic Information:

Name:	Vigan.05G096800.01 Multiple alignment Variant Information
Position:	Chr05:7431283..7433917 (- strand)
Length:	2635

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MFS5, Glycine max]
GO:	Molecular Function: methyltransferase activity (GO:0008168)
InterPro:	tRNA (guanine-N1-)-methyltransferase, eukaryotic (IPR007356)
	tRNA methyltransferase (IPR016009)
	tRNA (guanine(9)-N(1))-methyltransferase TRM10 (IPR016653)
	tRNA methyltransferase TRM10-type domain (IPR028564)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:34.73,28.81,14.51,12.37,29.61,22.18,10.58,13.53
Arabidopsis thaliana homolog:	AT5G47680.1

Automatic updates:

Name:	NM_001255585 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max tRNA methyltransferase 10 homolog A-like (LOC100783260), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:7431283..7431744 (- strand)
Length:	462
Type:	three_prime_UTR

Position:	Chr05:7431745..7431960 (- strand)
Length:	216
Type:	CDS

Position:	Chr05:7432396..7432755 (- strand)
Length:	360
Type:	CDS

Position:	Chr05:7433374..7433826 (- strand)
Length:	453
Type:	CDS

Position:	Chr05:7433827..7433917 (- strand)
Length:	91
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G096800.01
TTTCGAAAAG TAAAACTACG AGCAAATAAA ACTGACCAAA TTAAAGGAAG CAGTTCCGCG GAGAGTGTCT CCAACAAATC
CCTAATCCAA AATGCCGGAA TCACCCGGCG GCGGAGACGC CGGCGCTCCA CCGCAGACAA CGGAATTGAA AAGGCCTCAC
ACTGACCAAA ACGCCGCCGA AAAAACCGAC GCGGATCCTC CGGTGCTCTC GAAAAACGCA CAGAAGAAGC TGGCGAAGCA
GCAGAGGTTT GAGGCGAAAA AGGCGGAGAA GAAAGCCGCG GCGAAGGAGC AGAAGCGAAG AGATGTAGAG AGAAAGCGCA
AGGAGTGGGA AGACAGCCTC GCCGGCGTCT CCCAAGAGGA GAGAGCGAAG CTATTGGAGT CTCGAAGAAC CCTCCGCAAG
GAGAGAATGG AGAAGAGGTC ACTGGAGAAA GAAAACAAGA GAGAGAGACT AACTGTAGCG AGAGAACAAG GTCAAAACGT
CGTCGTCGAT CTCCAGTTTT CTCACCTCAT GAACCCTAAC GAAATCCACA GCCTCGTTCA GCAGGTTATG TATTGTTATG
CTGTGAATGG AAGGTGCGCT TCTCCTGCGC ATCTTTGGCT CACTGGCTGC GACGGGGAAA TGGATAGTGC ATTGAAGCGG
ATTCCGGGGT TTGATAAATG GATAATTGAG AAGGAGAATA GGTCTTACAT TGAAGCCTTG TGTGATCGAA AGGAGGATTT
GGTTTATCTC ACTGCGGATT CAGAGATTGT TCTTGAAGAA CTTGATTTGA AGAAGTTTTA TATTATTGGC GGGTTGGTGG
ATAGGAACCG GTGGAAGGGC ATAACGTTGA AGAAAGCACA AGAGCAAGGG ATCCAAACGG CTAAACTCCC TATAGGAAAT
TTCATGAAGA TGTCTAGCTC TCAGGTTCTT ACTGTGAATC AAGTGGTAGA AATATTACTC AAGTTCTTGG AGACGAAGGA
CTGGAAAACA TCTTTTTTTG CCGTTATCCC TCAACGGAAA AGATGTCAAT CCGATTCAGA AGGAAATGCA GAAAATACGG
TAGAGGAAGA ACACGAACAG AACGATGGTC TAACGGCAAG TAAAAAAAAA TGTGTTGAGG AGGTCCCTTC AAACAGTTAG
AATTGTCTCT GGCTCAAAGT ATCCTTACAA ACCTGTTGAT CTTCTTCTGA AAAGCCAACA TCAAAAACAG AAACTTCAAA
TAAGAGCTTC ACATGCAATC TTAATACTGA CAGGGATTTG GCATAATTTT TATATGCCTT GTAACAATCT GTAACAAGTA
TCCCCAGATG ATGTTGAAAT GGAATGATTC TTTTTGAATG TTGCTCCTTG GCTGTTGGAT TCATTCACAA TTATATTTAC
ATTCCTCTTC TTTTTTAAAA TTATTTTTCG TACTGTTTTT TTATCACCTC ACTTGTTCTC TCCTTTTCTC CTTTCATCTC
TCGGTTATCT TCACACTCGT TCGTTTTAAC CTTTTAGAAA CACATTCAAC AGTCGACGGC TGAGTAATGT TTTATTTTTG
ACATATGGCG ATTTAAGGTT TGAATATGAT TGTATGAGGA ACCTTATTTT CGGTAAAAGA TG

[show][hide][copy]CDS

>Vigan.05G096800.01
ATGCCGGAAT CACCCGGCGG CGGAGACGCC GGCGCTCCAC CGCAGACAAC GGAATTGAAA AGGCCTCACA CTGACCAAAA
CGCCGCCGAA AAAACCGACG CGGATCCTCC GGTGCTCTCG AAAAACGCAC AGAAGAAGCT GGCGAAGCAG CAGAGGTTTG
AGGCGAAAAA GGCGGAGAAG AAAGCCGCGG CGAAGGAGCA GAAGCGAAGA GATGTAGAGA GAAAGCGCAA GGAGTGGGAA
GACAGCCTCG CCGGCGTCTC CCAAGAGGAG AGAGCGAAGC TATTGGAGTC TCGAAGAACC CTCCGCAAGG AGAGAATGGA
GAAGAGGTCA CTGGAGAAAG AAAACAAGAG AGAGAGACTA ACTGTAGCGA GAGAACAAGG TCAAAACGTC GTCGTCGATC
TCCAGTTTTC TCACCTCATG AACCCTAACG AAATCCACAG CCTCGTTCAG CAGGTTATGT ATTGTTATGC TGTGAATGGA
AGGTGCGCTT CTCCTGCGCA TCTTTGGCTC ACTGGCTGCG ACGGGGAAAT GGATAGTGCA TTGAAGCGGA TTCCGGGGTT
TGATAAATGG ATAATTGAGA AGGAGAATAG GTCTTACATT GAAGCCTTGT GTGATCGAAA GGAGGATTTG GTTTATCTCA
CTGCGGATTC AGAGATTGTT CTTGAAGAAC TTGATTTGAA GAAGTTTTAT ATTATTGGCG GGTTGGTGGA TAGGAACCGG
TGGAAGGGCA TAACGTTGAA GAAAGCACAA GAGCAAGGGA TCCAAACGGC TAAACTCCCT ATAGGAAATT TCATGAAGAT
GTCTAGCTCT CAGGTTCTTA CTGTGAATCA AGTGGTAGAA ATATTACTCA AGTTCTTGGA GACGAAGGAC TGGAAAACAT
CTTTTTTTGC CGTTATCCCT CAACGGAAAA GATGTCAATC CGATTCAGAA GGAAATGCAG AAAATACGGT AGAGGAAGAA
CACGAACAGA ACGATGGTCT AACGGCAAGT AAAAAAAAAT GTGTTGAGGA GGTCCCTTCA AACAGTTAG

[show][hide][copy]PROTEIN

>Vigan.05G096800.01
MPESPGGGDA GAPPQTTELK RPHTDQNAAE KTDADPPVLS KNAQKKLAKQ QRFEAKKAEK KAAAKEQKRR DVERKRKEWE
DSLAGVSQEE RAKLLESRRT LRKERMEKRS LEKENKRERL TVAREQGQNV VVDLQFSHLM NPNEIHSLVQ QVMYCYAVNG
RCASPAHLWL TGCDGEMDSA LKRIPGFDKW IIEKENRSYI EALCDRKEDL VYLTADSEIV LEELDLKKFY IIGGLVDRNR
WKGITLKKAQ EQGIQTAKLP IGNFMKMSSS QVLTVNQVVE ILLKFLETKD WKTSFFAVIP QRKRCQSDSE GNAENTVEEE
HEQNDGLTAS KKKCVEEVPS NS*