GBrowse Details

Vigan.05G098400.01

Basic Information:
Name: Vigan.05G098400.01
Multiple alignment
Variant Information
Position: Chr05:7568148..7572068 (+ strand)
Length: 3921
Functional Information:
Description: Similar to Uncharacterized protein. [I1L053, Glycine max]
GO: Biological Process: isoprenoid biosynthetic process (GO:0008299)
InterPro: Polyprenyl synthetase (IPR000092)
Terpenoid synthase (IPR008949)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.93,2.18,77.56,33.50,52.87,74.12,43.01,39.84
Arabidopsis thaliana homolog: AT4G17190.1, AT5G47770.1
Structure :
Position: Chr05:7568148..7568359 (+ strand)
Length: 212
Type: five_prime_UTR
Position: Chr05:7568360..7568470 (+ strand)
Length: 111
Type: CDS
Position: Chr05:7569114..7569138 (+ strand)
Length: 25
Type: CDS
Position: Chr05:7569311..7569426 (+ strand)
Length: 116
Type: CDS
Position: Chr05:7569549..7569635 (+ strand)
Length: 87
Type: CDS
Position: Chr05:7569742..7569858 (+ strand)
Length: 117
Type: CDS
Position: Chr05:7569947..7570035 (+ strand)
Length: 89
Type: CDS
Position: Chr05:7570511..7570562 (+ strand)
Length: 52
Type: CDS
Position: Chr05:7571024..7571119 (+ strand)
Length: 96
Type: CDS
Position: Chr05:7571279..7571323 (+ strand)
Length: 45
Type: CDS
Position: Chr05:7571402..7571491 (+ strand)
Length: 90
Type: CDS
Position: Chr05:7571571..7571642 (+ strand)
Length: 72
Type: CDS
Position: Chr05:7571758..7571886 (+ strand)
Length: 129
Type: CDS
Position: Chr05:7571887..7572068 (+ strand)
Length: 182
Type: three_prime_UTR


>Vigan.05G098400.01
TGGGTTATAT AATTGCATTA CACACGTGTG ACAGAAGACA CACTCACATG CAGGGTGAAG AGCGCCTCCT TCCTTAAAGT
CATCACTTCC CCTCTTTGTC GCCATTTCAT ATTTATGATC TCAAAATTCC AAGACCAAAA TTTGAAACAC CTACCCAAAT
TTCTCTGTTC TGATTTTTAC CTCTATTAAG TAATTAATTC TTCTTCTGAT CCATGGCGGA TCTCAAGTCC ACATTCTCAA
ACGTCTATTA CGTTCTCAAA GACGAACTCC TCCACGACCC CGCTTTTGAA TTCTCCGATG ACGCTCGCCA ATGGGTCGAC
CGGATGCTGG ACTACAATGT GCCAGGAGGA AAGTTGAACC GGGGACTCTC AGTCATTGAC AGCTACAAAC TGTTGAAAGA
AGGACAGACA TTAAATGATG ACGAAATTTT CCTTGCTAGT GCTCTTGGTT GGTGTATTGA ATGGCTTCAG GCGTATTTTC
TTGTCCTTGA TGACATTATG GATAATTCGC ACACACGTAG GGGTCAACCA TGCTGGTTTA GAGTGCCCGA GGTTGGGATG
ATTGCAGCAA ATGATGGAGT TTTACTAAGA AACCATATTC CACGCATTCT TAAGAACCAT TTTAGGGGAA AGCCATATTA
CGTAGATCTT CTTGATTTGT TTAATGAGGT TGAGTTCCAG ACTGCTTCAG GACAGATGAT AGATCTGATT ACCACACTGC
AAGGAGGAAA AGACCTCTCC AAATACACAT TAACTCTGCA TCGGCGTATT GTTCAGTACA AGACTGCTTA TTATTCGTTT
TACCTCCCAG TTGCATGTGC ATTGCTCATG GCGGGTGAGA ATCTGGAAAA CCATGTTGAT GTGAAGAACA TTCTTGTTGA
GATGGGAACC TACTTTCAAG TACAGGATGA TTATTTGGAT TGCTTTGGGG ATCCTGATAC TATTGGAAAG ATAGGTACAG
ATATTGAAGA TTTTAAATGC TCTTGGTTAG TTGCAAAAGC TTTGGAGCTT AGCAATGAGC AACAAAAGAA AGTTCTATAC
GACAACTATG GTAATGCAGA TCCAGAAAAT GTTGCTAAAG TAAAGGCCCT GTATAATGAG CTTAATCTTA AGGGTGCATT
TGAGGAGTAT GAGAGCAAGA GCTATGAGAA GCTTGTAACT TCCATTGAAG CTCATCCTAG CAAAGCAGTT CAAGCTGTAT
TGAAGTCCTT TTTGGCTAAG ATTTACAAGA GGCAGAAGTA GAGTGAGTGT ACGGCGAGGA CCAAAATTGT TTTAACGTGC
AATAGAAACT AGAGTTCTGA TTTCTGTCTG GAGCCGAATA TTGTTCCGGC AAAATTTTCA ACGTTGATTT TCTTGTCTTC
TATCTTGTAA GCTGTCATGG GATACTGGTT TGACTATTAA TAATCTCTTC ATCCTTTTGC TCA

>Vigan.05G098400.01
ATGGCGGATC TCAAGTCCAC ATTCTCAAAC GTCTATTACG TTCTCAAAGA CGAACTCCTC CACGACCCCG CTTTTGAATT
CTCCGATGAC GCTCGCCAAT GGGTCGACCG GATGCTGGAC TACAATGTGC CAGGAGGAAA GTTGAACCGG GGACTCTCAG
TCATTGACAG CTACAAACTG TTGAAAGAAG GACAGACATT AAATGATGAC GAAATTTTCC TTGCTAGTGC TCTTGGTTGG
TGTATTGAAT GGCTTCAGGC GTATTTTCTT GTCCTTGATG ACATTATGGA TAATTCGCAC ACACGTAGGG GTCAACCATG
CTGGTTTAGA GTGCCCGAGG TTGGGATGAT TGCAGCAAAT GATGGAGTTT TACTAAGAAA CCATATTCCA CGCATTCTTA
AGAACCATTT TAGGGGAAAG CCATATTACG TAGATCTTCT TGATTTGTTT AATGAGGTTG AGTTCCAGAC TGCTTCAGGA
CAGATGATAG ATCTGATTAC CACACTGCAA GGAGGAAAAG ACCTCTCCAA ATACACATTA ACTCTGCATC GGCGTATTGT
TCAGTACAAG ACTGCTTATT ATTCGTTTTA CCTCCCAGTT GCATGTGCAT TGCTCATGGC GGGTGAGAAT CTGGAAAACC
ATGTTGATGT GAAGAACATT CTTGTTGAGA TGGGAACCTA CTTTCAAGTA CAGGATGATT ATTTGGATTG CTTTGGGGAT
CCTGATACTA TTGGAAAGAT AGGTACAGAT ATTGAAGATT TTAAATGCTC TTGGTTAGTT GCAAAAGCTT TGGAGCTTAG
CAATGAGCAA CAAAAGAAAG TTCTATACGA CAACTATGGT AATGCAGATC CAGAAAATGT TGCTAAAGTA AAGGCCCTGT
ATAATGAGCT TAATCTTAAG GGTGCATTTG AGGAGTATGA GAGCAAGAGC TATGAGAAGC TTGTAACTTC CATTGAAGCT
CATCCTAGCA AAGCAGTTCA AGCTGTATTG AAGTCCTTTT TGGCTAAGAT TTACAAGAGG CAGAAGTAG

>Vigan.05G098400.01
MADLKSTFSN VYYVLKDELL HDPAFEFSDD ARQWVDRMLD YNVPGGKLNR GLSVIDSYKL LKEGQTLNDD EIFLASALGW
CIEWLQAYFL VLDDIMDNSH TRRGQPCWFR VPEVGMIAAN DGVLLRNHIP RILKNHFRGK PYYVDLLDLF NEVEFQTASG
QMIDLITTLQ GGKDLSKYTL TLHRRIVQYK TAYYSFYLPV ACALLMAGEN LENHVDVKNI LVEMGTYFQV QDDYLDCFGD
PDTIGKIGTD IEDFKCSWLV AKALELSNEQ QKKVLYDNYG NADPENVAKV KALYNELNLK GAFEEYESKS YEKLVTSIEA
HPSKAVQAVL KSFLAKIYKR QK*