VIGGS:GBrowse

Vigan.05G099500.01

Basic Information:

Name:	Vigan.05G099500.01 Multiple alignment Variant Information
Position:	Chr05:7666142..7669672 (+ strand)
Length:	3531

Functional Information:

Description:	Similar to Uncharacterized protein. [I1L068, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:254.98,52.86,65.12,62.04,70.49,81.07,64.53,52.39
Arabidopsis thaliana homolog:	AT4G17170.1

Automatic updates:

Name:	NM_001251238 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max guanine nucleotide regulatory protein (RAB2), mRNA.
PubMed ID:	8806409 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:7666142..7666515 (+ strand)
Length:	374
Type:	five_prime_UTR

Position:	Chr05:7666516..7666561 (+ strand)
Length:	46
Type:	CDS

Position:	Chr05:7667093..7667232 (+ strand)
Length:	140
Type:	CDS

Position:	Chr05:7668022..7668104 (+ strand)
Length:	83
Type:	CDS

Position:	Chr05:7668555..7668759 (+ strand)
Length:	205
Type:	CDS

Position:	Chr05:7669063..7669131 (+ strand)
Length:	69
Type:	CDS

Position:	Chr05:7669361..7669453 (+ strand)
Length:	93
Type:	CDS

Position:	Chr05:7669454..7669672 (+ strand)
Length:	219
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.05G099500.01
AAAACATCTT TATCTAGTTC TTTTATCTCT TACTCCATGG GCCTAAAAGG CCCAACAGCC TGGGCCATAA ATACGTATCG
CACGCGTATA GTTATGGTAT AATCTTAAGA GAGAAGAAAG AAAGTGAGAA GGGAGAAGGA AGGTATAGTA TAGAAGAACG
AAACGTATTA TCTTGCACTG CATTGGATCG CATCGCTGGA ACGGAACACA ATAGAACTCT TATTTATTTA ATTTGACTAT
CTCTCTTATT TTCTCTCTCC TTAATTACTT CTTGATCATC ATCTTCATCA TCTTCTCTTC TATTCTCTTC TTTTCCTCTC
TCTGTTTTCT TTCACAACAA TTCTCCTTCC AGATTCCAAC CTTAACTGTT CGCAATGTCT TACGCATACC TTTTCAAATA
CATCATCATC GGGGACACTG GAGTTGGAAA GTCCTGTCTT CTACTTCAAT TCACGGACAA GCGCTTTCAA CCTGTCCATG
ACTTGACCAT CGGTGTTGAA TTTGGTGCCC GGATGATCAC AATTGATAAC AAACCAATCA AGTTGCAAAT ATGGGATACG
GCTGGTCAAG AATCATTCAG ATCTATCACT AGGTCGTATT ATAGAGGTGC TGCTGGTGCA CTGCTTGTTT ATGATATAAC
CAGGAGAGAG ACATTTAATC ACTTGGCTAG CTGGTTGGAA GATGCAAGGC AGCATGCAAA TGCAAATATG ACAATTATGC
TGATTGGTAA CAAGTGTGAT CTTGCTCATA GACGGGCAGT AAGCACTGAG GAAGGCGAGC AATTTGCAAA GGAGCATGGG
TTGATATTCA TGGAGGCCTC AGCAAAAACT GCTCAGAATG TTGAAGAGGC ATTCATAAAA ACAGCTGCAA CCATATACAA
GAAGATTCAG GATGGAGTTT TTGATGTATC AAATGAGTCT TATGGAATTA AAGTAGGATA TGGTGGAATT CCTGGACCTT
CTGGAGGTAG GGACGGCCCT TCTGCTGCGG CTGGAGGCTG CTGCAGTTGA ATGGAACATA TCAGAACCAA TTTGCATCAA
TATAGTCCTT TATGTATTCT CTTCTTTTCT ATATTTTGGG TTTGGATATG ATGATTAAAT GTTCTGTCCA TTGATAAAAT
CAGATAATTG TATAATGTTT TCTTTTTAAT CTTGTCTTTG TTTCTTTGAC TTGAACTGAT TATTTGTCTA TATTTGTGTG
CATAGTTAAT CGATCTGTTG TTTCATTCT

[show][hide][copy]CDS

>Vigan.05G099500.01
ATGTCTTACG CATACCTTTT CAAATACATC ATCATCGGGG ACACTGGAGT TGGAAAGTCC TGTCTTCTAC TTCAATTCAC
GGACAAGCGC TTTCAACCTG TCCATGACTT GACCATCGGT GTTGAATTTG GTGCCCGGAT GATCACAATT GATAACAAAC
CAATCAAGTT GCAAATATGG GATACGGCTG GTCAAGAATC ATTCAGATCT ATCACTAGGT CGTATTATAG AGGTGCTGCT
GGTGCACTGC TTGTTTATGA TATAACCAGG AGAGAGACAT TTAATCACTT GGCTAGCTGG TTGGAAGATG CAAGGCAGCA
TGCAAATGCA AATATGACAA TTATGCTGAT TGGTAACAAG TGTGATCTTG CTCATAGACG GGCAGTAAGC ACTGAGGAAG
GCGAGCAATT TGCAAAGGAG CATGGGTTGA TATTCATGGA GGCCTCAGCA AAAACTGCTC AGAATGTTGA AGAGGCATTC
ATAAAAACAG CTGCAACCAT ATACAAGAAG ATTCAGGATG GAGTTTTTGA TGTATCAAAT GAGTCTTATG GAATTAAAGT
AGGATATGGT GGAATTCCTG GACCTTCTGG AGGTAGGGAC GGCCCTTCTG CTGCGGCTGG AGGCTGCTGC AGTTGA

[show][hide][copy]PROTEIN

>Vigan.05G099500.01
MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA
GALLVYDITR RETFNHLASW LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF
IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD GPSAAAGGCC S*